View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10347_low_5 (Length: 437)

Name: NF10347_low_5
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10347_low_5
NF10347_low_5
[»] chr3 (4 HSPs)
chr3 (1-420)||(43624015-43624442)
chr3 (311-401)||(48950638-48950728)
chr3 (316-381)||(33979982-33980047)
chr3 (311-366)||(36011001-36011056)
[»] chr5 (6 HSPs)
chr5 (313-401)||(9465771-9465859)
chr5 (309-382)||(43222173-43222246)
chr5 (311-374)||(14733609-14733672)
chr5 (313-381)||(3440888-3440956)
chr5 (313-401)||(35650346-35650434)
chr5 (310-346)||(4592452-4592488)
[»] chr7 (3 HSPs)
chr7 (313-381)||(27386897-27386965)
chr7 (310-381)||(675978-676049)
chr7 (311-372)||(37134378-37134439)
[»] chr8 (4 HSPs)
chr8 (328-401)||(16313982-16314055)
chr8 (310-401)||(15901479-15901570)
chr8 (311-379)||(21492825-21492893)
chr8 (311-384)||(17922445-17922518)
[»] chr2 (2 HSPs)
chr2 (313-384)||(373123-373194)
chr2 (329-372)||(33723544-33723587)
[»] chr6 (1 HSPs)
chr6 (311-374)||(1514796-1514859)
[»] chr1 (2 HSPs)
chr1 (327-381)||(5446779-5446833)
chr1 (311-401)||(24413243-24413329)


Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 420
Target Start/End: Original strand, 43624015 - 43624442
Alignment:
Q  1 caaaaagcctcacaagacttggaacaggcatccggttaaaatgagctacgtgtggaatgtggattatatatgttttttggattaaaagaaattgtaaaaa 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43624015 caaaaagcctcacaagacttggaacaggcatccagttaaaatgagctacgtgtggaatgtggattatatatgttttttggattaaaagaaattgtaaaaa 43624114  T
Q  101 atatatatgatcgtggattttatcccatatatatat--------ttcataagtataactcagataatgtttcataaacatttaatatgttgtagactata 192  Q
    |||||||||||||||||| |||||||||||||||||        |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||    
T  43624115 atatatatgatcgtggatattatcccatatatatatatatatatttcataagtacaactcagatgatgttgcataaacatttaatatgttgtagactata 43624214  T
Q  193 ttgaaattatttctccatgcatgatatgtgcgtttcgttgaacgcttaagnnnnnnntttgcctacaatttataggtcataaactcattgcgtttaagcc 292  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||| ||||       |||||||||||||||||||||||||||||| |||| |||||||    
T  43624215 ttgaaattatttctcaatgcatgatatatgcgtttcgttgaacgcctaagaaaaaattttgcctacaatttataggtcataaactcactgcgcttaagcc 43624314  T
Q  293 cgtgaagatgtattagacgagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtc 392  Q
    | ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||     
T  43624315 catgaagatgtattagacgagttgagatcctctctatttataaaaataaatggagattgtcattataaaagagatagacacacaaaataggttttaggtt 43624414  T
Q  393 ctatcattatatcatactaaaaataact 420  Q
    ||||||||||||||||||||||||||||    
T  43624415 ctatcattatatcatactaaaaataact 43624442  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 311 - 401
Target Start/End: Complemental strand, 48950728 - 48950638
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||||||||||||  |||||||||| |||||||| |||| |||||| ||||| | ||||||| |||||||||  | | |||||||||||    
T  48950728 gagttgagatcctctccatttataaaattaaatggagattaccattattaaagataaagacacataaaataggtggtggatcctatcatta 48950638  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 33980047 - 33979982
Alignment:
Q  316 gagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaata 381  Q
    ||||||||||  |||||| |||||||||||| ||||  |||| |||||||||||||||| ||||||    
T  33980047 gagatcctctcgatttattaaaataaatggagattacaattagaaaagagatagacacaaaaaata 33979982  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 366
Target Start/End: Complemental strand, 36011056 - 36011001
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagaga 366  Q
    |||||||||||||||  ||||||||||||||||||| ||| | ||||| |||||||    
T  36011056 gagttgagatcctctcaatttataaaaataaatggagattgtaattatgaaagaga 36011001  T

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Target: chr5 (Bit Score: 49; Significance: 7e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 9465859 - 9465771
Alignment:
Q  313 gttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||||||||||| ||||||||||||||||||| |||  |||||| ||||||||||||||| |||||||||  | | |||||||||||    
T  9465859 gttgagatcctcttcatttataaaaataaatggagattgccattatgaaagagatagacacataaaataggtggtggatcctatcatta 9465771  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 309 - 382
Target Start/End: Complemental strand, 43222246 - 43222173
Alignment:
Q  309 acgagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaatag 382  Q
    |||||||||||| ||||  ||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||    
T  43222246 acgagttgagatactctccatttataaaaataaatggagattgtcattatgaaagagatagacacaaaaaatag 43222173  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 14733672 - 14733609
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacaca 374  Q
    |||||||||||||||  ||||||||||||||||| | ||| ||||||  |||||||||||||||    
T  14733672 gagttgagatcctctccatttataaaaataaatgaagattgtcattaggaaagagatagacaca 14733609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 381
Target Start/End: Complemental strand, 3440956 - 3440888
Alignment:
Q  313 gttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaata 381  Q
    |||||||||||||  |||||| |||||||||||| ||||  ||||  ||||||||||||||| ||||||    
T  3440956 gttgagatcctctccatttattaaaataaatggagattacaattaggaaagagatagacacaaaaaata 3440888  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 401
Target Start/End: Complemental strand, 35650434 - 35650346
Alignment:
Q  313 gttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||||||||||  |||||| |||||||||||| |||   |||| |||| ||||||||||| |||||||||  | |||||||| ||||    
T  35650434 gttgagatcctctccatttattaaaataaatggagattgcaattagaaaaaagatagacacaaaaaataggtggtgggtcctattatta 35650346  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 310 - 346
Target Start/End: Original strand, 4592452 - 4592488
Alignment:
Q  310 cgagttgagatcctctttatttataaaaataaatgga 346  Q
    |||||| |||||||||| |||||||||||||||||||    
T  4592452 cgagttaagatcctcttcatttataaaaataaatgga 4592488  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 313 - 381
Target Start/End: Original strand, 27386897 - 27386965
Alignment:
Q  313 gttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaata 381  Q
    |||||||||||||  ||||||||||||||||||| ||| | ||||| ||||||||||||||| ||||||    
T  27386897 gttgagatcctctccatttataaaaataaatggagattgttattatgaaagagatagacacaaaaaata 27386965  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 381
Target Start/End: Original strand, 675978 - 676049
Alignment:
Q  310 cgagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaata 381  Q
    |||||||||||||||| ||||||||||||||||||   ||| |||||||  |||||||| ||||| ||||||    
T  675978 cgagttgagatcctctctatttataaaaataaatgacgattgtcattatgtaagagataaacacaaaaaata 676049  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 37134439 - 37134378
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagaca 372  Q
    |||||||||||||||  ||||||||||||||| ||| ||| ||||||| | |||||||||||    
T  37134439 gagttgagatcctctccatttataaaaataaacggagattgtcattatgatagagatagaca 37134378  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 328 - 401
Target Start/End: Complemental strand, 16314055 - 16313982
Alignment:
Q  328 atttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||| |||||||||||| ||| ||||||| ||||||||||| ||| |||||||||| | |||||||| ||||    
T  16314055 atttattaaaataaatggagattgtcattatgaaagagatagatacaaaaaataggttgtgggtcctattatta 16313982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 310 - 401
Target Start/End: Complemental strand, 15901570 - 15901479
Alignment:
Q  310 cgagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||| ||||| |||| |||||| |||||||||||| |||  |||||| ||||||||||| ||| |||||||||  | |||||||| ||||    
T  15901570 cgagttaagatcttcttcatttattaaaataaatggagattgccattatgaaagagatagatacaaaaaataggtcgtgggtcctattatta 15901479  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 379
Target Start/End: Complemental strand, 21492893 - 21492825
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaa 379  Q
    ||||||||||| | || ||||||||||||||||||| |||  |||||  ||||||||||||||| ||||    
T  21492893 gagttgagatctttttcatttataaaaataaatggagattgccattaggaaagagatagacacaaaaaa 21492825  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 384
Target Start/End: Complemental strand, 17922518 - 17922445
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggt 384  Q
    ||||||||||||| |  ||||||||||||||||| |||||   ||||| |||| ||| |||||| |||||||||    
T  17922518 gagttgagatcctatccatttataaaaataaatgaaaattgctattatgaaagtgattgacacaaaaaataggt 17922445  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 384
Target Start/End: Original strand, 373123 - 373194
Alignment:
Q  313 gttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggt 384  Q
    |||||||||||||  ||||||||||||||||||| |||   ||||| ||| ||||||||||| |||||||||    
T  373123 gttgagatcctctccatttataaaaataaatggagattgcaattatgaaaaagatagacacaaaaaataggt 373194  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 329 - 372
Target Start/End: Complemental strand, 33723587 - 33723544
Alignment:
Q  329 tttataaaaataaatggaaattatcattataaaagagatagaca 372  Q
    |||||||||||||| | |||||||||||| ||||||||||||||    
T  33723587 tttataaaaataaaagaaaattatcattagaaaagagatagaca 33723544  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 311 - 374
Target Start/End: Complemental strand, 1514859 - 1514796
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacaca 374  Q
    ||||||||||| ||| |||||||||||||||||||| ||| | ||||| || || |||||||||    
T  1514859 gagttgagatcatctctatttataaaaataaatggagattgtaattatgaacgaaatagacaca 1514796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 381
Target Start/End: Complemental strand, 5446833 - 5446779
Alignment:
Q  327 tatttataaaaataaatggaaattatcattataaaagagatagacacacaaaata 381  Q
    |||||||||||||||||||| ||| || | | |||||||||||||||| ||||||    
T  5446833 tatttataaaaataaatggagattgtcgtaagaaaagagatagacacaaaaaata 5446779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 401
Target Start/End: Original strand, 24413243 - 24413329
Alignment:
Q  311 gagttgagatcctctttatttataaaaataaatggaaattatcattataaaagagatagacacacaaaataggttttaggtcctatcatta 401  Q
    |||||||||||||||  ||||||||||||||||| | ||| |||||||    |||||||||||| ||||| | |  | |||||||||||||    
T  24413243 gagttgagatcctctccatttataaaaataaatgtatattgtcattat----gagatagacacaaaaaatggatggtgggtcctatcatta 24413329  T

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