View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_8 (Length: 414)
Name: NF10347_low_8
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 4359174 - 4358781
Alignment:
| Q |
1 |
aatgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4359174 |
aatgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctca |
4359075 |
T |
|
| Q |
101 |
agccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcata |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
4359074 |
agccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcata |
4358975 |
T |
|
| Q |
201 |
acttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
300 |
Q |
| |
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|||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4358974 |
acttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
4358875 |
T |
|
| Q |
301 |
agtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacac |
394 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
4358874 |
agtaattgtcgaagcttccccggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacac |
4358781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 394
Target Start/End: Original strand, 4353097 - 4353489
Alignment:
| Q |
1 |
aatgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctca |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4353097 |
aatgatggacctcaacatgatggtcaaacgccgtag-aagcttgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctca |
4353195 |
T |
|
| Q |
101 |
agccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtcata |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||| |
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| T |
4353196 |
agccgccgtaatgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacacacccaactacaaatttgccctaaacaacaagcgtcata |
4353295 |
T |
|
| Q |
201 |
acttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4353296 |
acttcttcacgtgtgctcacgcgcctctcacaaaagaagacgacattgtaaccgttaatgcggttaaagctgtgttggagagcatggtaaacaataatga |
4353395 |
T |
|
| Q |
301 |
agtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttgagggtgaccgactcaccttttccgctacac |
394 |
Q |
| |
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||| |||||||| ||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
4353396 |
agtaattgtcgaagcttccccggcacttcccggatttggaaggactcctaaggcgcggcagttgagggtgaccgactcaccttttccgctacac |
4353489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 4349710 - 4350083
Alignment:
| Q |
1 |
aatgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccatggtggctccacctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
4349710 |
aatgatggacctcaacatgatggttaaacaccgcggcaagctcgccggaaaagccatcaccaacctcatgtttcatcaccaccacggtggctccacctca |
4349809 |
T |
|
| Q |
101 |
agccgccgtaacgacacacgcctctctaccacaagggagtatgagttcagctgcagcaacaccccaagttacaaatttgccctaaacaacaagcgtc--- |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | ||||||||| | | |||||||| || | |
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|
| T |
4349810 |
agccgtcgtaacgacacacgcctctctaccacaagggagtatgagttcagctgtagcaacacccctaaatacaaattttcatttaacaacaaacgccacc |
4349909 |
T |
|
| Q |
198 |
------ataacttcttcacgtgtactcacgcgcctctcacacaagacgacgacattgtgaccgttaatgcggttaaagctgtgttggagagcatggtaaa |
291 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||| |||| |||||||| |
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| T |
4349910 |
gcaacaaccacttcttcacgtgtgctcacgcgcctctcacacaagacgatgacattgttaccgttaatgcggttaaggctgtgttagagaaaatggtaaa |
4350009 |
T |
|
| Q |
292 |
caataatgaagtgattgtcgaggcttcaccggcacttcccggatttggacggactcctaaggcaaggcagttga |
365 |
Q |
| |
|
||||||||| ||||| | |||||||| |||| || ||||| | | |||| ||||||| | | |||||||||| |
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|
| T |
4350010 |
caataatgaggtgataggtgaggcttccccggtgctccccggttctcgacgaactcctatgaccaggcagttga |
4350083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 43475543 - 43475430
Alignment:
| Q |
1 |
aatgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccatcaccaacctcatgtt------tcatcaccaccatggtggctcc |
94 |
Q |
| |
|
|||||||| ||| ||||||||| | ||||||||| |||||||||||||||||||||| |||| || ||||| ||| ||| |||| ||||||||| |
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| T |
43475543 |
aatgatgggcctaaacatgatgctcaaacgccgcagcaagctcgccggaaaagccattgccaatctaatgttccaccatcaccacaaccacggtggctcc |
43475444 |
T |
|
| Q |
95 |
acctcaagccgccg |
108 |
Q |
| |
|
|||||||||||||| |
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|
| T |
43475443 |
acctcaagccgccg |
43475430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 43486161 - 43486106
Alignment:
| Q |
2 |
atgatggacctcaacatgatggttaaacgccgcggcaagctcgccggaaaagccat |
57 |
Q |
| |
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||||||| ||| ||||||||| | ||||||||| ||||||| |||||||||||||| |
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|
| T |
43486161 |
atgatgggcctaaacatgatgctcaaacgccgcagcaagcttgccggaaaagccat |
43486106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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