View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10347_low_9 (Length: 414)
Name: NF10347_low_9
Description: NF10347
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10347_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 300
Target Start/End: Complemental strand, 9388629 - 9388348
Alignment:
| Q |
19 |
agctagtatatggattaatttagctagtttccagatattttggtcttaatagaaaggaatcgtactataacttcatgtcaatttatattctctatttact |
118 |
Q |
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| T |
9388629 |
agctagtacatggattaatttagctagtttccagatattttggtcttgatagaaaggaatcatactataacttcatgtcaatttatattctctatttact |
9388530 |
T |
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| Q |
119 |
ttgtaggctcttgattggtatgtgaaacatttaaaacccgtaaatattcgatcatgtgatagaaaaagagttattctctttgatgttgacaaggataaag |
218 |
Q |
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| T |
9388529 |
ttgtaggctcttgattggtatgtgaaacatttaaaacccgtaaatattctatcatgtgacagaaaaagagttattctctttgatgttgacaaggataaag |
9388430 |
T |
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| Q |
219 |
aaacattgtatgaacctgaataagtgtcacaaatagaatgcttagttttcctcattaagaaaagatatatgctagacatcaa |
300 |
Q |
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| T |
9388429 |
aaacattgcatgaacctgaataagtgtcacaaatagaatgcttagttttcctcattaacaaaagagatatgctagacatcaa |
9388348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 354 - 409
Target Start/End: Complemental strand, 9388294 - 9388239
Alignment:
| Q |
354 |
cgtataagttgtattaatatgagaactgctaaaacaagcaaagatgtgatgatgtc |
409 |
Q |
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| T |
9388294 |
cgtataagttgtattaatatgagaactgctaaaacaagcaaagatgtgatgatgtc |
9388239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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