View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10348_2 (Length: 549)
Name: NF10348_2
Description: NF10348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10348_2 |
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Alignment Details
Target: chr3 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 8 - 537
Target Start/End: Complemental strand, 1420933 - 1420388
Alignment:
| Q |
8 |
tgagatgaatcgttcagcctctacaacaaggtacatttttcaagttcattctctacttgaactttgacaccttaaacatcacnnnnnnnnn-----tgaa |
102 |
Q |
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| T |
1420933 |
tgagataaatcgttcagcctctacaacaaggtacatttttcaagttcattctctacttgaactttgacaccttaaacatcacaaaaaaataaaaaatgaa |
1420834 |
T |
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| Q |
103 |
ctagtataaggtgtgaaaagacatcaagatccaatttttcatctccattcttcaatttcctcatgtaacttcagaaataatcgcaatttatttcgttatt |
202 |
Q |
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| T |
1420833 |
gtagtataaggtgtgaaaagacatcaagatccaatttttcatctccattcttcaatttcctcatgtaacttcagaaataatcgcaatttatttcgttatt |
1420734 |
T |
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| Q |
203 |
caaagattaaatctcatatacttttttattttgatatttacaatagaatggacatattccttttcaacagc-nnnnnnnnngtaaggaaatattcataag |
301 |
Q |
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| T |
1420733 |
caaagattaaatctcatatacttttttattttgatatttacaatagaatggacatattccttttcaacaacaaaaaaaaaagtaaggaaatattcataag |
1420634 |
T |
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| Q |
302 |
ttttgagtagttgagatg----atatatatttatagcatcgaatatatataaaaattcatttttaaaatcataaacacacgtcaaaattgttctctacaa |
397 |
Q |
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| T |
1420633 |
-tttgagtagttgagatgatatatatatatttatagcatcgaatatatataaaaattcatttttaaaatcataaacacacgtcaaaattgttctctacaa |
1420535 |
T |
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| Q |
398 |
ttttatatataatgataatatgtaatgatttcctcatttgaattgtcaataaaaatatcattctatat------atcctttagcttcctttgatacactc |
491 |
Q |
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| T |
1420534 |
ttttatatataatgataatatgtaatgatttcctcattttaattgtcaataaaaatatcattctatatttttagatccattagcttcctttgatacacct |
1420435 |
T |
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| Q |
492 |
tgtgttagaggagcttggttttataatata-tttgtttagtttcttc |
537 |
Q |
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| T |
1420434 |
tgtgctagaggagcttagttttatgatatattttgtttagtttcttc |
1420388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 466 - 537
Target Start/End: Original strand, 23236313 - 23236385
Alignment:
| Q |
466 |
atcctttagcttcctttgatacactctgtgttagaggagcttggttttataatata-tttgtttagtttcttc |
537 |
Q |
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|||||||||||| ||||| ||||| ||||||||||||||||| |||| ||||||| ||||||||| |||||| |
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| T |
23236313 |
atcctttagctttctttggtacaccttgtgttagaggagcttgattttttaatatattttgtttagcttcttc |
23236385 |
T |
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