View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10348_3 (Length: 527)
Name: NF10348_3
Description: NF10348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10348_3 |
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| [»] chr4 (7 HSPs) |
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| [»] scaffold0831 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 7 - 527
Target Start/End: Complemental strand, 44186119 - 44185612
Alignment:
| Q |
7 |
gtgagaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttc-----acccactcgtcaggat |
101 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
44186119 |
gtgaaaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaacaagtcaaagtatctcttctcttcacccactcgtcaggat |
44186020 |
T |
|
| Q |
102 |
cactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaacca |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
44186019 |
cactttctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattatcatcgctcaagttaaaagaaacca |
44185920 |
T |
|
| Q |
202 |
tgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaacagggtcata |
301 |
Q |
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|||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
44185919 |
tgtatggatcagctacattcgtatacgcccaccaatggcacaatccattcaagtacacctcatgacgaatgatcttatagtcgtcattaatagggtcata |
44185820 |
T |
|
| Q |
302 |
gccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcaggtgggctaggaggaacatattccaattcgttagtagctggattccataat |
400 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44185819 |
gccatatccatgaagatgaaaccaaacagtattaaaaggtaaagactcaggtgggctaggaggaacatattcc----------------------ataat |
44185742 |
T |
|
| Q |
401 |
gcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatc---caacatatcaatataaatatcatcctgttgaaatgaaactg |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
44185741 |
gcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaacaacatatcaatataaatatcatcctgttgaaatgaaactg |
44185642 |
T |
|
| Q |
498 |
gccatttcaaataaattcctcagcagagag |
527 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
44185641 |
gccatttcaaataaattcctcagcagagag |
44185612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 7 - 261
Target Start/End: Complemental strand, 1327272 - 1327019
Alignment:
| Q |
7 |
gtgagaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatcactt |
106 |
Q |
| |
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|||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| || |
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| T |
1327272 |
gtgaaaagaagatgtctttacatgctttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtaccttttcacccactcgtcaggatcagtt |
1327173 |
T |
|
| Q |
107 |
tctctctttcacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgtat |
206 |
Q |
| |
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||| |||| |||||| |||| |||||||||||||||||||||||| |||||||| ||||| ||||| ||||||| ||||||||||||||||||||||||| |
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| T |
1327172 |
tctatctt-cacccactcattaggatagctatcttgcatatccaacggtaaatgcgtagtaaagaagttctcattgctcaagttaaaagaaaccatgtat |
1327074 |
T |
|
| Q |
207 |
ggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacacct |
261 |
Q |
| |
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| ||||||||| | | | | |||||||||||| |||| ||||||||||||||||| |
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| T |
1327073 |
gcatcagctacattcgtgttcgcccaccaatgacacattccattcaagtacacct |
1327019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 262 - 426
Target Start/End: Complemental strand, 4877479 - 4877315
Alignment:
| Q |
262 |
catgacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcaggtgggctagg |
360 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |
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| T |
4877479 |
catgacgaatgatcttatagtcgttattaacagggtcatagccatatccatgaagatgaaaccaaacagtattaaaaggtaaagactcagttgggctagg |
4877380 |
T |
|
| Q |
361 |
aggaacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcaga |
426 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
4877379 |
aggaacagtttccaattccttagtagctggatt-cataatgcaataaactgttgatcaagatcaga |
4877315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 267 - 509
Target Start/End: Complemental strand, 1326869 - 1326620
Alignment:
| Q |
267 |
cgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcaggtgggctaggaggaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||| || | |||| ||||| |
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| T |
1326869 |
cgaatgatcttatagtcgtcattaacagggtcataaccatatccatgaagatgaaaccaaacagtattaaaaggtaaaaactgagccgaactagaaggaa |
1326770 |
T |
|
| Q |
366 |
catattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaacatatc |
465 |
Q |
| |
|
|| ||||||||| ||||||||||||||||||||||||| ||| | |||||| ||||||| |||||||| | ||| |||||||||||||||||||||| |
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|
| T |
1326769 |
cagtttccaattccttagtagctggattccataatgcaacaaattcatgatcacgatcagataaacaaagaacgtcgttaataccagaatccaacatatt |
1326670 |
T |
|
| Q |
466 |
aatataaata------tcatcctgttgaaatgaaactggccatttcaaat |
509 |
Q |
| |
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| ||||| || |||||||||||||||||||||||||||||||||| |
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| T |
1326669 |
agtataactataaacctcatcctgttgaaatgaaactggccatttcaaat |
1326620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 7 - 103
Target Start/End: Complemental strand, 4877811 - 4877715
Alignment:
| Q |
7 |
gtgagaagaagctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatca |
103 |
Q |
| |
|
|||| |||||| |||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
4877811 |
gtgaaaagaagttgtctttacatgctttgagatcaatgcaacaaacccatttaacaccaccaagtcaaagtatctattcacccactcgtcaggatca |
4877715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 424 - 507
Target Start/End: Complemental strand, 4876300 - 4876214
Alignment:
| Q |
424 |
agagaaacaaagcaagtcattaataccagaatccaacatatcaatataaat---atcatcctgttgaaatgaaactggccatttcaa |
507 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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|
| T |
4876300 |
agagaaacaaagcacgtcgttaataccggaatccaacatatcaatataaatctcatcatcatgttgaaatgaaactggccatttcaa |
4876214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 4877718 - 4877677
Alignment:
| Q |
125 |
atcaggatagctatcttgcatatccaagggtaaatgtgtagt |
166 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
4877718 |
atcagaatagctatcttgcatatccaagggtaaatgtgtagt |
4877677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 265 - 509
Target Start/End: Complemental strand, 5388053 - 5387806
Alignment:
| Q |
265 |
gacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaagatgaaaccaaaca-tattaaaaggtaaagactcaggtgggctaggagg |
363 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||| ||||||||| |||||||||| ||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
5388053 |
gacgaatgatcttatagtcgtcattaatagggtcataaccatacccatgaagacaaaaccaaacagtattaaaaggtaaagactcagccgggttagaagg |
5387954 |
T |
|
| Q |
364 |
aacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccagaatccaacata |
463 |
Q |
| |
|
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
5387953 |
aacattttccaattccttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcacatcattaataccagaatccaacata |
5387854 |
T |
|
| Q |
464 |
tcaatataaatatcatcctgttgaaa--tgaaactggccatttcaaat |
509 |
Q |
| |
|
||| | || | |||||||||||||| |||||||||||||||||||| |
|
|
| T |
5387853 |
tcagtttatacctcatcctgttgaaatttgaaactggccatttcaaat |
5387806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 169 - 259
Target Start/End: Complemental strand, 5388269 - 5388179
Alignment:
| Q |
169 |
agaaattctcatcgctcaagttaaaagaaaccatgtatggatcagctacttccatatacgcccaccaatggcacaatccattcaagtacac |
259 |
Q |
| |
|
|||| ||||||| |||||||||||||||||||||||||| |||| ||| || ||| |||||||||||| |||| ||||||||||||||| |
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|
| T |
5388269 |
agaagttctcattgctcaagttaaaagaaaccatgtatgcatcatctatatctctattcgcccaccaatgacacagtccattcaagtacac |
5388179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 26532346 - 26532281
Alignment:
| Q |
17 |
gctgtctttacatggtttgagatcatagcaacgaacccatttaacaccaccaagtcaaagtatctc |
82 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
26532346 |
gctgtctttacatgctttaagatcatagcaacaaacccatttaacaccaccaagtctaagtatctc |
26532281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 26532269 - 26532180
Alignment:
| Q |
116 |
cacccattcatcaggatagctatcttgcatatccaagggtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta |
205 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||| ||||||| | || ||||| |||||||||||||||||||||||| |
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|
| T |
26532269 |
cacccattcatcatgatatctatcttgcatatccaagggtaacagtgtagtagaaaacatctcagtgctcaagttaaaagaaaccatgta |
26532180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 26531978 - 26531929
Alignment:
| Q |
266 |
acgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaa |
315 |
Q |
| |
|
|||||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
|
|
| T |
26531978 |
acgaatgatcttatagtcatcattaacatggtcataaccacatccatgaa |
26531929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 54 - 205
Target Start/End: Original strand, 18011246 - 18011396
Alignment:
| Q |
54 |
catttaacaccaccaagtcaaagtatctcttcacccactcgtcaggatcactttctctctttcacccattcatcaggatagctatcttgcatatccaagg |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| | ||| |||||||||| ||||||| | || ||| || |||||||| ||||||||| |
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|
| T |
18011246 |
catttaacaccaccaagtcaaagtatctcttcgcacactcctttggagcactttctct-tttcacctactcctcacaatttctatcttgaatatccaaga |
18011344 |
T |
|
| Q |
154 |
gtaaatgtgtagttaagaaattctcatcgctcaagttaaaagaaaccatgta |
205 |
Q |
| |
|
||||||| |||| ||||| |||| || |||||||||||||| |||||| |
|
|
| T |
18011345 |
gtaaatgcttagtaaagaacacctcactgcacaagttaaaagaaatcatgta |
18011396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0831
Description:
Target: scaffold0831; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 353 - 461
Target Start/End: Original strand, 1841 - 1949
Alignment:
| Q |
353 |
gggctaggaggaacatattccaattcgttagtagctggattccataatgcaataaactgttgatcaagatcagagaaacaaagcaagtcattaataccag |
452 |
Q |
| |
|
||||||||||||||| | | |||||| ||||||||||||||||||||| |||| | | |||| || |||||| |||||||| | | | || ||||||| |
|
|
| T |
1841 |
gggctaggaggaacaaacttcaattccttagtagctggattccataatttaatatattcatgataaaaatcagataaacaaagaatgccgttgataccag |
1940 |
T |
|
| Q |
453 |
aatccaaca |
461 |
Q |
| |
|
||||||||| |
|
|
| T |
1941 |
aatccaaca |
1949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0831; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 1749 - 1802
Alignment:
| Q |
262 |
catgacgaatgatcttatagtcgtcattaacagggtcatagccatatccatgaa |
315 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| ||||||| ||| ||||||||| |
|
|
| T |
1749 |
catgacgaacaatcttatagtcgttattaacatggtcataaccaaatccatgaa |
1802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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