View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10348_5 (Length: 307)
Name: NF10348_5
Description: NF10348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10348_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 307
Target Start/End: Original strand, 1422882 - 1423190
Alignment:
| Q |
1 |
agatctattcatatataaaatataaaaacttcattccctataattgctagatcataaaaactatatttctattattgatagattagatcataacaaactt |
100 |
Q |
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| T |
1422882 |
agatctattgatacataaaatataaaaactgcattccctataattgttagatcataaaaactatatttctattattgatagactagatcataacaaactt |
1422981 |
T |
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| Q |
101 |
tgttatcattattgattac--tgtctttctctaaacataacaaataattattagaaaaaacacaattatcgaacgttttaatcatttcacacttcatcgt |
198 |
Q |
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| T |
1422982 |
tgttatcattattgattacattgtctttctctaaacataacaaataattattagaaaaaaaacaatcatcgaacgttttaatcatttcatacttcatcgt |
1423081 |
T |
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| Q |
199 |
tattttannnnnnnggttacaatggaaggtacaatttgaaatcatttgatctaaattgctgtttatgaatttgaattcttttccttccgaggcttcgacc |
298 |
Q |
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| T |
1423082 |
tattttatttttttggttacaatggaaggtacaatttgaaatcatttgatctaaattgctgtttttgaatttgaattcttttccttccgaggcttcgacc |
1423181 |
T |
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| Q |
299 |
attcttctc |
307 |
Q |
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||||||||| |
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| T |
1423182 |
attcttctc |
1423190 |
T |
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