View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10348_low_1 (Length: 306)
Name: NF10348_low_1
Description: NF10348
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10348_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 17 - 298
Target Start/End: Original strand, 36724435 - 36724716
Alignment:
| Q |
17 |
agaaccaatatgtttttgtaaaaataaagtctcgttcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaat |
116 |
Q |
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| T |
36724435 |
agaaccaatatgtttttgtaaaaataaagtctcatgcgtcattgcagatacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaat |
36724534 |
T |
|
| Q |
117 |
attgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtttagggtaacgggagctccatgaccactg |
216 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36724535 |
attgcatttgtaacggtcgagggctggcgttttacatcgaattatttcctggctgtttagattcggctagtttagggtaacgggagctccatgaccactg |
36724634 |
T |
|
| Q |
217 |
cagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcgttcctttgct |
298 |
Q |
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| T |
36724635 |
cagataatttgagccgatctccaattctcaagaagatgcgttgctcgttcaaccacctgcatatttgtttcgttcctttgct |
36724716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 89 - 298
Target Start/End: Complemental strand, 712018 - 711810
Alignment:
| Q |
89 |
tcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggctagtt |
188 |
Q |
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||||||||||||||||||||| |||| ||||||| |||||||| ||| | |||||||||||| ||| ||||||||| || ||| ||| | | ||| |
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| T |
712018 |
tcatagctgaagaaaatgagg-atcactattgcacttgtaacgtctgagtgttggctttttccacggaactatttcctaactattttgatccaattggtt |
711920 |
T |
|
| Q |
189 |
tagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttcg |
288 |
Q |
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| T |
711919 |
tctgttaacgggtgctccacgactgcctcagataatttgacccggtatctaatcctcgagaaggtgcattgctcgttcaaccacctgcatgtttgtttcg |
711820 |
T |
|
| Q |
289 |
ttcctttgct |
298 |
Q |
| |
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||| |||||| |
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| T |
711819 |
ttcttttgct |
711810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 74 - 297
Target Start/End: Complemental strand, 717242 - 717018
Alignment:
| Q |
74 |
caattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtt |
173 |
Q |
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||||||| || ||||||||||| ||||||||||||||||| ||| ||| ||||||||| ||| | ||| |||||||| || | ||||||| ||| | |
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| T |
717242 |
caattcccaccttgttcatagccgaagaaaatgaggcatcgataaagcacttgtaacggctgagtgttggatttttccactgatctgtttcctaactgct |
717143 |
T |
|
| Q |
174 |
tagattcggctagtttagggtaacgggagctccatgacca-ctgcagataatttgagccaatctccaatcct-caagaagatgcgttacacgttcaacca |
271 |
Q |
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||||| || || |||| | |||| | ||||| ||||| ||| | ||||||||||| |||||||||| | ||||||| || | | | |||||||||| |
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| T |
717142 |
tagatccgactggtttctgttaacaagcgctccgcgaccacctgga-ataatttgagctgatctccaatcttccaagaaggtgtgatgctcgttcaacca |
717044 |
T |
|
| Q |
272 |
cctgcatatttgtttcgttcctttgc |
297 |
Q |
| |
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||||||| |||||||| ||| ||||| |
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| T |
717043 |
cctgcatgtttgtttcattcttttgc |
717018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 85 - 298
Target Start/End: Complemental strand, 14540433 - 14540220
Alignment:
| Q |
85 |
ttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatcgaattatttcctagctgtttagattcggct |
184 |
Q |
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||||||||| |||||||||||||||||| ||||||||||||||| | ||| |||||||||| ||| | || | || ||| |||||||||| || | |
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| T |
14540433 |
ttgttcatatatgaagaaaatgaggcatcgatattgcatttgtaatgcctgagtgctggcttttcccacccaactgttacctgactgtttagatctggtt |
14540334 |
T |
|
| Q |
185 |
agtttagggtaacgggagctccatgaccactgcagataatttgagccaatctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgt |
284 |
Q |
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||| | | |||| | ||| |||||| | | |||||||||||| ||||||||||||||||||| || ||| | |||||| |||||||| ||||||| |
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| T |
14540333 |
ggttcctgatgacggacgttccgcgaccaccgaaaataatttgagccgatctccaatcctcaagaaggtgtgttgctcgttcacccacctgcgtatttgt |
14540234 |
T |
|
| Q |
285 |
ttcgttcctttgct |
298 |
Q |
| |
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|| |||| |||||| |
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| T |
14540233 |
tttgttcttttgct |
14540220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 64 - 154
Target Start/End: Complemental strand, 8267093 - 8267003
Alignment:
| Q |
64 |
atacacatttcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacggtcgagggctggctttttccatc |
154 |
Q |
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|||||||| ||||||||||| ||||| | ||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||| |
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| T |
8267093 |
atacacatcccaattcctactatgttcggggatgaagaaaacgaagcatcaatattgcatttgtaacggtcggttgctggcttttcccatc |
8267003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 29985012 - 29984959
Alignment:
| Q |
234 |
tctccaatcctcaagaagatgcgttacacgttcaaccacctgcatatttgtttc |
287 |
Q |
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|||||| || ||||||||||| || |||||||||| ||||||||||||||||| |
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| T |
29985012 |
tctccattcatcaagaagatgtgtagcacgttcaacaacctgcatatttgtttc |
29984959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 36473975 - 36473917
Alignment:
| Q |
73 |
tcaattcctactttgttcatagctgaagaaaatgaggcatcaatattgcatttgtaacg |
131 |
Q |
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|||||||||||||||||||||| |||||| || ||||||||||| ||||||||| |||| |
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| T |
36473975 |
tcaattcctactttgttcatagatgaagagaacgaggcatcaatgttgcatttgcaacg |
36473917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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