View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_high_1 (Length: 537)
Name: NF10349_high_1
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 18 - 285
Target Start/End: Complemental strand, 8944228 - 8943968
Alignment:
| Q |
18 |
gtctccagttcatgatccactcccatctgtcatccgcgcacactcttacttccgatacagtttcgtacctgtttcttgcaataaaaataagccttgggaa |
117 |
Q |
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| T |
8944228 |
gtctccagttcatgctccactcccatctg-------cgcgcactcctacttccgatacagtttcggacctgtttcttgcaatagaaataagccttgggaa |
8944136 |
T |
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| Q |
118 |
cttctcatgcaatattaaacttccagcccatttatgagactaaaacaaggttgtttctccattgccgatccttctaacacttgaattagagaaccaattt |
217 |
Q |
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| T |
8944135 |
cttctcatgcaatattaaacttccagcccatttatgagactaaaacaaggttgtttctccattgccgatccttctaacacttgaattagagaaccaattt |
8944036 |
T |
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| Q |
218 |
gtacacgcttctgttaccgtatctgtgtaacagcaaaggatgccacaccacctcagtgtttgttaaca |
285 |
Q |
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| T |
8944035 |
gtgcacgcttctgttaccgtatctgtgtaacagcaaaggatgccacaccacctcagtgtttgttaaca |
8943968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 319 - 522
Target Start/End: Complemental strand, 8943779 - 8943576
Alignment:
| Q |
319 |
actttgttgtattattagagttcttaaaatacaaaacctactccaacaccaatacaaaacaaaaccaagcagagagctaaacatggaatatggattatgt |
418 |
Q |
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| T |
8943779 |
actttgttgtattattagagttcttaaaatacaaaacctactccgacaccaatacaaaataaaaccaagcagagagctaaacatgtaatatggattatgt |
8943680 |
T |
|
| Q |
419 |
ggggtagggcttttagtatcaattgtggtatgcaatatgcatgaacatactcttttacacattaatgattgcaaatagtttcataaaggatcttgtagtt |
518 |
Q |
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| T |
8943679 |
ggggtagggctgttagtatcaattgtggtatgcaatatgcatgaacatactcttttacacattaatgattacaaatagtttcataaaggatcttgtagtt |
8943580 |
T |
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| Q |
519 |
tcat |
522 |
Q |
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|||| |
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| T |
8943579 |
tcat |
8943576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 64 - 219
Target Start/End: Complemental strand, 43475701 - 43475546
Alignment:
| Q |
64 |
tacttccgatacagtttcgtacctgtttcttgcaataaaaataagccttgggaacttctcatgcaatattaaacttccagcccatttatgagactaaaac |
163 |
Q |
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| T |
43475701 |
tacttccgacacagttccagatctgtttcttgcaacagaaaaatgtcttaggaacgtctcttgcaatatggaacttccagcc-atctttgagaccaaagc |
43475603 |
T |
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| Q |
164 |
aaggttgttt-ctccattgccgatccttctaacacttgaattagagaaccaatttgt |
219 |
Q |
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| T |
43475602 |
aaggttgttttcaccattaccgatccttctaaaaattgaattagagaaccaatttgt |
43475546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 43564695 - 43564754
Alignment:
| Q |
159 |
aaaacaaggttgtttctccattgccgatccttctaacacttgaattagagaaccaatttg |
218 |
Q |
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|||||||||||||| ||||| |||||||| |||||| ||||||||||||||| ||||| |
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| T |
43564695 |
aaaacaaggttgttcaaccatttccgatcctactaacaattgaattagagaaccgatttg |
43564754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 16116646 - 16116698
Alignment:
| Q |
144 |
cccatttatgagactaaaacaaggttgtttctccattgccgatccttctaaca |
196 |
Q |
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| T |
16116646 |
cccatctattagaccaaaacaaggttgtttcaccattgccaatccatctaaca |
16116698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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