View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_high_10 (Length: 333)
Name: NF10349_high_10
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_high_10 |
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| [»] scaffold0536 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 48952121 - 48951803
Alignment:
| Q |
1 |
cgatgaaggctggaaaatctaccatgccaccacactgctccatggactaattgagaatttcgtggagcagcacccacctgattgtatcgtggcggatttt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
48952121 |
cgatgaaggctggaaaatctaccatgccaccacactgctccacggactaattgagaatttcgtggagcagcacccacctgattgcatcgtggcggatttt |
48952022 |
T |
|
| Q |
101 |
ttattcccgtgggcggatgagctagcaaagaagcttcacattccgagattcgtgttcaatggtttctcactctttaccatatgtgccatggaatccctca |
200 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
48952021 |
ttattcccgtgggctgatgagctagcaaagaagctgcacattccgagattcgtgttcaacggtttctcactctttaccatatgtgccatggaatccctca |
48951922 |
T |
|
| Q |
201 |
aatcacaccctctccctgaggatgcttctggttcttttgttattccgaattttccttacgacattgtcattaattcaacaccacccttggagtccaagtc |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48951921 |
aattgcaccctctccctgaggatgcttctggttcttttgttattccgaattttccttacgatattgtcattaattcaacaccacccttggagtccaagtc |
48951822 |
T |
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| Q |
301 |
ttttatggatcctctgctc |
319 |
Q |
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||||||||||||||||||| |
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| T |
48951821 |
ttttatggatcctctgctc |
48951803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 109 - 198
Target Start/End: Complemental strand, 48974873 - 48974784
Alignment:
| Q |
109 |
gtgggcggatgagctagcaaagaagcttcacattccgagattcgtgttcaatggtttctcactctttaccatatgtgccatggaatccct |
198 |
Q |
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| T |
48974873 |
gtgggtggatgagttggcaaacagacttcacattcccagactcgccttcaacggtttctcactctttgccatatgtgccatggaatccct |
48974784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 48911698 - 48911738
Alignment:
| Q |
59 |
ttcgtggagcagcacccacctgattgtatcgtggcggattt |
99 |
Q |
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| T |
48911698 |
ttcgtggagcagcacccaccagattgcatcgtggctgattt |
48911738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 156; Significance: 7e-83; HSPs: 3)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 50 - 285
Target Start/End: Original strand, 803 - 1038
Alignment:
| Q |
50 |
attgagaatttcgtggagcagcacccacctgattgtatcgtggcggattttttattcccgtgggcggatgagctagcaaagaagcttcacattccgagat |
149 |
Q |
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| T |
803 |
attgagaatttcgtggaacaggaaccacctgattgcatcgtagcggattttttattcccttgggtggatgagctggcaaacaagcttcacattccgagat |
902 |
T |
|
| Q |
150 |
tcgtgttcaatggtttctcactctttaccatatgtgccatggaatccctcaaatcacaccctctccctgaggatgcttctggttcttttgttattccgaa |
249 |
Q |
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| T |
903 |
ttgccttcaacggtttctcactatttaccatatgtgccatggaatcccttaaatcacaacctctccctgaggatgcttctggttcttttgttattccgaa |
1002 |
T |
|
| Q |
250 |
ttttccttacgacattgtcattaattcaacaccacc |
285 |
Q |
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| T |
1003 |
ttttccttacgatatcatcattaattcaaaaccacc |
1038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 9848 - 9984
Alignment:
| Q |
59 |
ttcgtggagcagcacccacctgattgtatcgtggcggattttttattcccgtgggcggatgagctagcaaagaagcttcacattccgagattcgtgttca |
158 |
Q |
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|||||||||||||||||||| ||||| |||||| | |||||||| || || |||| ||||| || ||||| |||||||| ||||| ||| || |||| |
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| T |
9848 |
ttcgtggagcagcacccaccggattgcatcgtgacagattttttgtttccttgggttgatgaacttgcaaacaagcttcaaattccaagactctctttca |
9947 |
T |
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| Q |
159 |
atggtttctcactctttaccatatgtgccatggaatc |
195 |
Q |
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| T |
9948 |
acggtttctctctgtttgctatttgtgccatggaatc |
9984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 59 - 195
Target Start/End: Original strand, 5864 - 6000
Alignment:
| Q |
59 |
ttcgtggagcagcacccacctgattgtatcgtggcggattttttattcccgtgggcggatgagctagcaaagaagcttcacattccgagattcgtgttca |
158 |
Q |
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|||||||||||||||||||| ||||| || ||||||||||| || || || |||| ||||| || ||||| |||||||| ||||| ||| || |||| |
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| T |
5864 |
ttcgtggagcagcacccaccggattgcattgtggcggatttcttgtttccttgggttgatgaacttgcaaacaagcttcaaattcctagactcagtttca |
5963 |
T |
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| Q |
159 |
atggtttctcactctttaccatatgtgccatggaatc |
195 |
Q |
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| T |
5964 |
acggtttctctctgtttgcaatttgtgccatagaatc |
6000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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