View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_high_7 (Length: 425)

Name: NF10349_high_7
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_high_7
NF10349_high_7
[»] chr7 (2 HSPs)
chr7 (5-381)||(3584704-3585081)
chr7 (39-86)||(23690278-23690325)
[»] chr1 (3 HSPs)
chr1 (159-357)||(10020333-10020538)
chr1 (14-68)||(10020596-10020650)
chr1 (13-62)||(10034267-10034316)
[»] scaffold0718 (2 HSPs)
scaffold0718 (159-326)||(972-1137)
scaffold0718 (36-86)||(1210-1260)
[»] chr3 (3 HSPs)
chr3 (159-326)||(12677075-12677240)
chr3 (32-86)||(20132515-20132569)
chr3 (277-366)||(20132233-20132322)
[»] scaffold0049 (2 HSPs)
scaffold0049 (159-254)||(40664-40759)
scaffold0049 (36-84)||(40541-40589)
[»] chr6 (2 HSPs)
chr6 (36-86)||(2878212-2878262)
chr6 (165-255)||(2878045-2878134)
[»] chr5 (2 HSPs)
chr5 (279-357)||(29599625-29599702)
chr5 (231-282)||(25827699-25827748)
[»] scaffold0013 (1 HSPs)
scaffold0013 (271-366)||(44702-44796)
[»] chr8 (2 HSPs)
chr8 (307-366)||(25182630-25182689)
chr8 (149-217)||(21230097-21230165)
[»] scaffold0727 (1 HSPs)
scaffold0727 (273-366)||(3437-3530)
[»] chr4 (3 HSPs)
chr4 (273-366)||(23551302-23551395)
chr4 (321-373)||(9346718-9346769)
chr4 (149-209)||(22216029-22216089)
[»] chr2 (1 HSPs)
chr2 (29-62)||(27757621-27757654)


Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 5 - 381
Target Start/End: Original strand, 3584704 - 3585081
Alignment:
Q  5 ttggaaatgcttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagctacatagtattgctcaaac 104  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3584704 ttggaaatgcttagagtaccaaaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagctacatagtattgctcaaac 3584803  T
Q  105 aatgatactcacatatgaagcnnnnnnn-tatagtaaaaaggggaaatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgatta 203  Q
    |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3584804 aatgatactcacatatgaagcaaaaaaaatatagtaaaaaggggaaatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgatta 3584903  T
Q  204 tgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgag 303  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3584904 tgatgagtatcttctacaacatgtcccatagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttggtggtaagaacaagtctttgag 3585003  T
Q  304 atcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgttaatagtagc 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3585004 atcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgttaatagtagc 3585081  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 23690278 - 23690325
Alignment:
Q  39 gtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct 86  Q
    |||||||||||| ||||||||||||||| |||||||||||||||||||    
T  23690278 gtgtgtatgaaaatatgaccaatagtctgtagagaaccaatgcaagct 23690325  T

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Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 159 - 357
Target Start/End: Complemental strand, 10020538 - 10020333
Alignment:
Q  159 tcaaattctcaccggttatgtt--acaaagaaaataaatggtgattatgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaactttga 256  Q
    ||||||||||||| |||||| |  | | |||||| |||||| |||||| ||| |||||||||||||||||| ||||||||||||| ||||||||||||||    
T  10020538 tcaaattctcaccagttatgctctatagagaaaagaaatggcgattataatgtgtatcttctgcaacatgttccatagtcattattctcttgaactttga 10020439  T
Q  257 aagtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaatt-ttaaattttttgaaat----ggaagggttatgaaatgcat 351  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||    ||||||||||| ||||||||    
T  10020438 aagtatgctagcctcctctgccttggtggtaagaacaattctttgagatgaaaagaattattaaattttttgaaatggaaggaagggttataaaatgcat 10020339  T
Q  352 gcaaat 357  Q
    ||||||    
T  10020338 gcaaat 10020333  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 10020650 - 10020596
Alignment:
Q  14 cttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaatagtctat 68  Q
    ||||||||||||| ||||||| |||||||||| ||||||| ||||||||||||||    
T  10020650 cttagagtaccagcaaatgtgcctcgtgtgtaagaaagtacgaccaatagtctat 10020596  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 10034316 - 10034267
Alignment:
Q  13 gcttagagtaccagaaaatgtgtctcgtgtgtatgaaagtatgaccaata 62  Q
    |||||||||||||||||||||| |||||||||| ||||||| ||||||||    
T  10034316 gcttagagtaccagaaaatgtgcctcgtgtgtaagaaagtacgaccaata 10034267  T

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Target: scaffold0718 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0718
Description:

Target: scaffold0718; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 326
Target Start/End: Complemental strand, 1137 - 972
Alignment:
Q  159 tcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaactttgaaa 258  Q
    ||||||||||||| |||||| || | |||||| | ||||||||| | |||| ||||||||||| |||| ||||||| ||||||||||||||||||||  |    
T  1137 tcaaattctcaccagttatgctatagagaaaagagatggtgattctaatgaatatcttctgcagcatgccccatagccattatgctcttgaactttgtca 1038  T
Q  259 gtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaatttttt 326  Q
    ||| ||||||  ||||||| ||||  || ||||||| ||| | |||  |||| |||||||| ||||||    
T  1037 gtaagctagc--cctctgcgttggcagtcagaacaattctctaagacaaaaacaattttaattttttt 972  T

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Target: scaffold0718; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 1260 - 1210
Alignment:
Q  36 ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct 86  Q
    |||||||||| |||| |||| |||| ||||| |||||||||||||||||||    
T  1260 ctcgtgtgtacgaaaatatggccaacagtctgtagagaaccaatgcaagct 1210  T

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Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 159 - 326
Target Start/End: Original strand, 12677075 - 12677240
Alignment:
Q  159 tcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaactttgaaa 258  Q
    ||||||||||||| |||||| || | |||||| | ||||||||| | |||| ||||||||||| |||| ||||||| ||||||||||| ||||||||  |    
T  12677075 tcaaattctcaccagttatgctatagagaaaagagatggtgattctaatgaatatcttctgcagcatgccccatagccattatgctctggaactttgtca 12677174  T
Q  259 gtatgctagcttcctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaatttttt 326  Q
    ||| ||||||  ||||||||||||  || ||||||| ||| | |||  |||| |||||||| ||||||    
T  12677175 gtaagctagc--cctctgccttggcagtcagaacaattctctaagacaaaaacaattttaattttttt 12677240  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 86
Target Start/End: Complemental strand, 20132569 - 20132515
Alignment:
Q  32 gtgtctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct 86  Q
    ||||||||||||||||| | ||||| ||||||||| |||||||||||||||||||    
T  20132569 gtgtctcgtgtgtatgacattatgatcaatagtctgtagagaaccaatgcaagct 20132515  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 20132322 - 20132233
Alignment:
Q  277 ccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc 366  Q
    ||||| |||||||||||| ||||||| |  |||| |||||||| |||||||||||||||  |||||  ||| ||||| ||||||| ||||    
T  20132322 ccttgatggtaagaacaattctttgaaacaaaaacaattttaatttttttgaaatggaaacgttatacaattcatgccaattcaaaaagc 20132233  T

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Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 40664 - 40759
Alignment:
Q  159 tcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaacttt 254  Q
    ||||||||||||| | |||| || | |||||| | ||||||||| |||||| ||||||||||| ||   ||||||| |||||||||||||||||||    
T  40664 tcaaattctcaccaggtatgctatagagaaaagagatggtgattctgatgaatatcttctgcagcaaaccccatagccattatgctcttgaacttt 40759  T

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Target: scaffold0049; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 36 - 84
Target Start/End: Original strand, 40541 - 40589
Alignment:
Q  36 ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaag 84  Q
    ||||||||||||||| || | |||||||||| |||||||||||| ||||    
T  40541 ctcgtgtgtatgaaaatacggccaatagtctgtagagaaccaattcaag 40589  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 2878262 - 2878212
Alignment:
Q  36 ctcgtgtgtatgaaagtatgaccaatagtctatagagaaccaatgcaagct 86  Q
    ||||||||||||||| || |||||||||||| |||||||||||||||||||    
T  2878262 ctcgtgtgtatgaaaatacgaccaatagtctgtagagaaccaatgcaagct 2878212  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 2878134 - 2878045
Alignment:
Q  165 tctcaccggttatgttacaaagaaaataaatggtgattatgatgagtatcttctgcaacatgtcccatagtcattatgctcttgaactttg 255  Q
    |||||||||||||| || | | |||| | ||||||||| |||||| ||||||||||| || | ||| ||| ||||||||||||||| ||||    
T  2878134 tctcaccggttatgctataga-aaaagagatggtgattctgatgaatatcttctgcagcaagccccgtagccattatgctcttgaagtttg 2878045  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 279 - 357
Target Start/End: Complemental strand, 29599702 - 29599625
Alignment:
Q  279 ttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaat 357  Q
    |||||||||||||||| | |||||||  |||| || ||||||||||| ||||||||| | ||||||||| |||||||||    
T  29599702 ttggtggtaagaacaattttttgagacaaaaacaactttaaattttt-gaaatggaaagattatgaaattcatgcaaat 29599625  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 25827699 - 25827748
Alignment:
Q  231 atagtcattatgctcttgaactttgaaagtatgctagcttcctctgccttgg 282  Q
    ||||||||||||||||||||||||| ||||| | ||||  ||||||||||||    
T  25827699 atagtcattatgctcttgaactttgtaagtaagttagc--cctctgccttgg 25827748  T

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Target: scaffold0013 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 44702 - 44796
Alignment:
Q  271 cctctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc 366  Q
    |||||||||||||||||| || || ||| |||||  |||| ||||||||| ||||  ||||||||  |||||| ||| ||||||||||| ||||||    
T  44702 cctctgccttggtggtaataataattctctgagacaaaaacaattttaaa-ttttgaaaatggaaatgttatgtaatacatgcaaattcgacaagc 44796  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 25182630 - 25182689
Alignment:
Q  307 aaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc 366  Q
    |||| |||||||||||||| ||||||||| | ||||| ||| | ||||||||||||||||    
T  25182630 aaaacaattttaaatttttggaaatggaaagattatgtaattcctgcaaattcaacaagc 25182689  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 21230165 - 21230097
Alignment:
Q  149 aatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatgagtatcttc 217  Q
    ||||||||  |||||||||||| ||||||| || | | |||||| ||||||||| ||||||||| ||||    
T  21230165 aatatttgtctcaaattctcactggttatgctatacaaaaaatatatggtgattgtgatgagtaccttc 21230097  T

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Target: scaffold0727 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0727
Description:

Target: scaffold0727; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 3530 - 3437
Alignment:
Q  273 tctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc 366  Q
    |||||||||||||||| ||||| || |||||   |||| ||||||  ||||||  |||||||| || |||||||| ||||| |||| |||||||    
T  3530 tctgccttggtggtaacaacaattccttgaggcaaaaataattttttatttttgaaaatggaaaggctatgaaattcatgccaattaaacaagc 3437  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 366
Target Start/End: Complemental strand, 23551395 - 23551302
Alignment:
Q  273 tctgccttggtggtaagaacaagtctttgagatcaaaagaattttaaattttttgaaatggaagggttatgaaatgcatgcaaattcaacaagc 366  Q
    |||||||||||||||| ||||| || |||||   |||| ||||||  ||||||  |||||||| || |||||||| ||||| |||| |||||||    
T  23551395 tctgccttggtggtaacaacaattccttgaggcaaaaataattttttatttttgaaaatggaaaggctatgaaattcatgccaattaaacaagc 23551302  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 373
Target Start/End: Original strand, 9346718 - 9346769
Alignment:
Q  321 ttttttgaaatggaagggttatgaaatgcatgcaaattcaacaagctttgtta 373  Q
    ||||||||||||||| ||||||||||| ||||| | |||||||||| ||||||    
T  9346718 ttttttgaaatggaaaggttatgaaattcatgc-acttcaacaagcattgtta 9346769  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 209
Target Start/End: Complemental strand, 22216089 - 22216029
Alignment:
Q  149 aatatttgaatcaaattctcaccggttatgttacaaagaaaataaatggtgattatgatga 209  Q
    ||||||||  |||||||||||||||||||| || | |||||| | ||||||||| ||||||    
T  22216089 aatatttggctcaaattctcaccggttatgctatatagaaaagagatggtgattgtgatga 22216029  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 62
Target Start/End: Original strand, 27757621 - 27757654
Alignment:
Q  29 aatgtgtctcgtgtgtatgaaagtatgaccaata 62  Q
    |||||||||||||||||||||| |||||||||||    
T  27757621 aatgtgtctcgtgtgtatgaaaatatgaccaata 27757654  T

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