View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_10 (Length: 413)
Name: NF10349_low_10
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 406
Target Start/End: Original strand, 44842016 - 44842404
Alignment:
| Q |
18 |
attctattatacactctatgcactagattttttgtctattatctgccatcttcctctcaccttttcccatcccctcactcctcagtgactgggtttgctc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44842016 |
attctattatacactctatgcactagattttttgtctattatctgccatcttcctctcaccttttcccattccctcactcctcagtgactgggtttgctc |
44842115 |
T |
|
| Q |
118 |
aagcccatctccgttcattataacggcatctttccaccaaagtcaaccagcattagatctcacataattttgtttttaaccaaaatatgaaattttcata |
217 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44842116 |
aagcccatctccgttcattataacagcatctttccaccaaagtcaaccagcattagatctcacataattttgtttttaaccaaaatatgaaattttcata |
44842215 |
T |
|
| Q |
218 |
cgtttttcaatgaattatttttcatatagcaagttcacttgctgtaattctttccaactttaaggttataatgaagagaaggaggacatgcctaaaattg |
317 |
Q |
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||||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44842216 |
cgtttttcaatgatttttttttcatatagcaagttcacttgttgtaattctttccaactttaaggttataatgaagagaaggaggacatgcctaaaattg |
44842315 |
T |
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| Q |
318 |
ttgcagagagaggttttcattcctttccaatttaaaaattcatgactcgtttaaaaattctatcttcgtgattttaattcttcatctct |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
44842316 |
ttgcagagagaggttttcattcctttccaatttaaaaattcatgactcgtttaaaaattctatctccgtgattttaattcttcaactct |
44842404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 30581222 - 30581165
Alignment:
| Q |
18 |
attctattatacactctatgcactagat-tttttgtctattatctgccatcttcctct |
74 |
Q |
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||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||||||| |
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| T |
30581222 |
attctattatacactatatgcactagatctttttatctcttctctcccatcttcctct |
30581165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 20606877 - 20606820
Alignment:
| Q |
18 |
attctattatacactctatgcactagat-tttttgtctattatctgccatcttcctct |
74 |
Q |
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||||||||||||||| |||||||||||| ||||| ||| || ||| |||||||||||| |
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| T |
20606877 |
attctattatacactatatgcactagatctttttatctcttctctcccatcttcctct |
20606820 |
T |
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