View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_11 (Length: 361)
Name: NF10349_low_11
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_11 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 28 - 356
Target Start/End: Complemental strand, 24709012 - 24708682
Alignment:
| Q |
28 |
tattgtatttattttcctaccaagtcttcaaaatttatcccaaaaacaaactacagaaaatccactttgattccataataccccatcaaataagcaacat |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
24709012 |
tattgtatttattttcctaccaagtcttcaaaatttatcccaaaaacaaactacagaaaatccactttgattccataatactccatcaaataagcaacat |
24708913 |
T |
|
| Q |
128 |
cgattac--acggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaaccgacagtgagcgataa |
225 |
Q |
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|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
24708912 |
cgattacgcacggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaacccacagtgagcgataa |
24708813 |
T |
|
| Q |
226 |
ctttcgttttcttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatcttcagctctcttctttgagctctttccctttgccttcag |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24708812 |
ctttcgttttcttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatcttcagctctcttctttgagctctttccctttgccttcag |
24708713 |
T |
|
| Q |
326 |
agaaatcatagacactattcttcttctctct |
356 |
Q |
| |
|
|||||||||| |||| ||||||||| ||||| |
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|
| T |
24708712 |
agaaatcatacacaccattcttcttttctct |
24708682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 13 - 356
Target Start/End: Complemental strand, 24746345 - 24746000
Alignment:
| Q |
13 |
agaatcaacattcaatattgtatttattttcctacc-aagtcttcaaaatttatcccaaaaacaaa-ctacagaaaatccactttgattccataataccc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||| ||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
24746345 |
agaaacaacattcaatattgtatttattctactacttaagtcttcaaaatttataccaaaaaaaaaactacagaaaatccactttgattccataataccc |
24746246 |
T |
|
| Q |
111 |
catcaaataagcaacatcgattacacggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaacc |
210 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||||||||||||| ||||||||||||||||| | |
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|
| T |
24746245 |
catcagataagcaacatcgattacacggggctgagaagctgagaaagttgtggttttggatcagagttcataccgatgataataatcaaaggaatgaaac |
24746146 |
T |
|
| Q |
211 |
gacagtgagcgataactttcgttttcttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatcttcagctctcttctttgagctctt |
310 |
Q |
| |
|
| ||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||| |||| |||||||||||| || ||||||||||||| || |
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| T |
24746145 |
catagtgagcgataaccttcgttttcttcataccccatgttgtccattccttcacagaatcaatcactgatcgatcttctactttcttctttgagctatt |
24746046 |
T |
|
| Q |
311 |
tccctttgccttcagagaaatcatagacactattcttcttctctct |
356 |
Q |
| |
|
|||||||||||| ||||||||| |||| | ||||||||| ||||| |
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|
| T |
24746045 |
tccctttgccttgagagaaatcgtagatgccattcttcttttctct |
24746000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 137 - 356
Target Start/End: Complemental strand, 21833360 - 21833141
Alignment:
| Q |
137 |
ggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaaccgacagtgagcgataactttcgttttc |
236 |
Q |
| |
|
||||||||| ||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||| | | ||||||||||||| ||||||||| |
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|
| T |
21833360 |
ggggctgagaagctgggagagttgtggttttggatcagagttcataccgatgatgataatcaaaggaatgaaaccatagtgagcgataaccttcgttttc |
21833261 |
T |
|
| Q |
237 |
ttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatcttcagctctcttctttgagctctttccctttgccttcagagaaatcatag |
336 |
Q |
| |
|
|| | |||||||||| |||||||||||| |||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
21833260 |
ttaataccccatgttgtccattccttcaaagaatcgatcgctgatcgatcttctgctttcttatttgagctctttccctttgcctttagagaaatcgtag |
21833161 |
T |
|
| Q |
337 |
acactattcttcttctctct |
356 |
Q |
| |
|
|| | ||||||||| ||||| |
|
|
| T |
21833160 |
acgccattcttcttttctct |
21833141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 13 - 356
Target Start/End: Original strand, 28185287 - 28185655
Alignment:
| Q |
13 |
agaatcaacattcaatattgtatttattttcctaccaagtcttcaaaatttatcccaaaaac------------aaactacagaaaatccactttgattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | | || || |||||||||||||||||||||| |||||| ||||||||||| ||||||| |
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| T |
28185287 |
agaatcaacattcaatattgtatttattctaccactaattcttcaaaatttatcccaaaaaagataaaaagaaaaaactagagaaaatccacattgattc |
28185386 |
T |
|
| Q |
101 |
cataataccccatcaaataagcaa-------------catcgattacacggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgat |
187 |
Q |
| |
|
||||||| |||||| | |||||| ||||||||||||||||||||| |||||| ||| |||||||||| ||||||| ||||||| || |
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|
| T |
28185387 |
cataatattccatcagaaaagcaagtgaaaatatgcacatcgattacacggggctgagaagctgagaaatttgtggttttggatcagaattcataccaat |
28185486 |
T |
|
| Q |
188 |
gatgataatcaaaggaatgaaccgacagtgagcgataactttcgttttcttcaaaccccatgttttccattccttcacagaatcgatcattgatcgatct |
287 |
Q |
| |
|
||||||||||||||||||||| | | ||||||| ||||| || |||||||||| |||||| ||| |||||||||||||||||||||||| |||||||||| |
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|
| T |
28185487 |
gatgataatcaaaggaatgaaaccatagtgagcaataacctttgttttcttcataccccaagttgtccattccttcacagaatcgatcactgatcgatct |
28185586 |
T |
|
| Q |
288 |
tcagctctcttctttgagctctttccctttgccttcagagaaatcatagacactattcttcttctctct |
356 |
Q |
| |
|
|| ||| |||||||||| ||||||||||| || |||||||||| | ||| | | ||||||||| ||||| |
|
|
| T |
28185587 |
tccgctgtcttctttgaactctttcccttcgctttcagagaaaccctaggcgccattcttcttttctct |
28185655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 124 - 225
Target Start/End: Complemental strand, 12819523 - 12819422
Alignment:
| Q |
124 |
acatcgattacacggggctgagtagctgataaagttgtggtttttgatcagaggtcataccgatgatgataatcaaaggaatgaaccgacagtgagcgat |
223 |
Q |
| |
|
|||| ||||||||| ||||||| |||||| |||||||||||||| |||||||| ||||||| ||||||||||||||| ||||||| | | ||||||| || |
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|
| T |
12819523 |
acatggattacacgaggctgagaagctgagaaagttgtggttttggatcagagttcataccaatgatgataatcaaatgaatgaaaccatagtgagcaat |
12819424 |
T |
|
| Q |
224 |
aa |
225 |
Q |
| |
|
|| |
|
|
| T |
12819423 |
aa |
12819422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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