View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_17 (Length: 292)
Name: NF10349_low_17
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 43560253 - 43559972
Alignment:
| Q |
1 |
ccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctctta |
100 |
Q |
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| T |
43560253 |
ccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatccaacaacacacaagcctctta |
43560154 |
T |
|
| Q |
101 |
cagaagcatatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560153 |
cagaagcatatcttaaggaagagaacaaaatcacagaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataac |
43560054 |
T |
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| Q |
201 |
cgattcgagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttg |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43560053 |
tgattcgagttactatgatgataatggcttaacagaagcttcaagagaaattttcaccagcaagcaagcattggaccctttg |
43559972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 136 - 259
Target Start/End: Complemental strand, 1992697 - 1992574
Alignment:
| Q |
136 |
gaaacaacagtaccatctatgcaaataccatcaattacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggcttaacag |
235 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1992697 |
gaaacaacagcaccacctatgcaaataccatcagttacatcacatggttcagcatttctaataaccgattcgagttactatgatgataatggtttaacag |
1992598 |
T |
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| Q |
236 |
aagcttcaagagaaattttcacca |
259 |
Q |
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| T |
1992597 |
aagcttcaagagaaattttcacca |
1992574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 51044692 - 51044772
Alignment:
| Q |
1 |
ccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatcca |
81 |
Q |
| |
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|||||||||||||||||||| || |||||||| |||||||| |||| |||||||| || | || ||||||||||||||| |
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| T |
51044692 |
ccagggagaacagataatgagataaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagggattgatcca |
51044772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 34626488 - 34626408
Alignment:
| Q |
1 |
ccagggagaacagataatgaaattaaaaacttctggaattcgtgtttaaagaagaagcttctaaagcaagggattgatcca |
81 |
Q |
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||||| ||||| |||||||| ||||||||||| |||||||| |||| |||||||| || | || ||||||||||||||| |
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| T |
34626488 |
ccaggtagaacggataatgagattaaaaacttttggaattcaagtttgaagaagaaactaatgaaacaagggattgatcca |
34626408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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