View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_low_18 (Length: 285)

Name: NF10349_low_18
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_low_18
NF10349_low_18
[»] chr1 (16 HSPs)
chr1 (17-189)||(10824546-10824718)
chr1 (17-188)||(22683140-22683311)
chr1 (57-185)||(37189565-37189693)
chr1 (17-170)||(18844476-18844629)
chr1 (56-189)||(19056367-19056500)
chr1 (69-189)||(18844677-18844798)
chr1 (62-187)||(37189368-37189492)
chr1 (56-186)||(15825737-15825865)
chr1 (56-187)||(19056150-19056281)
chr1 (59-172)||(10824383-10824496)
chr1 (56-144)||(22683357-22683445)
chr1 (69-121)||(22683290-22683342)
chr1 (68-121)||(10824514-10824567)
chr1 (80-121)||(19056307-19056348)
chr1 (71-121)||(18844608-18844658)
chr1 (76-121)||(37189496-37189541)
[»] chr2 (21 HSPs)
chr2 (17-187)||(16973064-16973234)
chr2 (19-188)||(2916377-2916545)
chr2 (17-185)||(44594415-44594583)
chr2 (17-169)||(38982734-38982886)
chr2 (69-189)||(44594246-44594367)
chr2 (57-188)||(40987656-40987787)
chr2 (56-188)||(16973280-16973412)
chr2 (76-189)||(11533680-11533794)
chr2 (17-162)||(24125836-24125975)
chr2 (57-196)||(13559519-13559657)
chr2 (56-187)||(38982557-38982688)
chr2 (56-184)||(2916593-2916721)
chr2 (28-181)||(40987834-40987987)
chr2 (57-162)||(24126146-24126245)
chr2 (120-187)||(24125670-24125737)
chr2 (68-121)||(16973213-16973266)
chr2 (68-121)||(44594383-44594436)
chr2 (57-134)||(13559357-13559434)
chr2 (68-121)||(38982702-38982755)
chr2 (76-121)||(2916526-2916571)
chr2 (76-121)||(24125812-24125857)
[»] chr8 (17 HSPs)
chr8 (56-188)||(13884488-13884620)
chr8 (17-189)||(42126380-42126553)
chr8 (58-187)||(13884706-13884835)
chr8 (17-188)||(29714541-29714712)
chr8 (56-169)||(2554066-2554179)
chr8 (57-187)||(42126601-42126731)
chr8 (56-189)||(11867898-11868030)
chr8 (76-187)||(29714778-29714889)
chr8 (90-188)||(43416262-43416360)
chr8 (59-138)||(14996678-14996758)
chr8 (68-118)||(2554002-2554052)
chr8 (76-121)||(14996608-14996653)
chr8 (56-148)||(15862540-15862632)
chr8 (68-121)||(29714691-29714744)
chr8 (61-169)||(26745959-26746067)
chr8 (61-169)||(26745281-26745389)
chr8 (76-121)||(42126532-42126577)
[»] scaffold0060 (1 HSPs)
scaffold0060 (56-188)||(22921-23053)
[»] chr7 (17 HSPs)
chr7 (57-189)||(28715640-28715772)
chr7 (76-189)||(30862216-30862329)
chr7 (56-189)||(28715858-28715991)
chr7 (56-188)||(41985909-41986041)
chr7 (56-196)||(6474271-6474412)
chr7 (17-189)||(6474458-6474629)
chr7 (57-170)||(47373679-47373792)
chr7 (56-184)||(30862436-30862564)
chr7 (17-187)||(47373462-47373633)
chr7 (115-188)||(41986183-41986256)
chr7 (61-169)||(38408121-38408229)
chr7 (61-169)||(6271188-6271296)
chr7 (71-121)||(41986058-41986108)
chr7 (80-169)||(6270237-6270326)
chr7 (76-121)||(47373612-47373657)
chr7 (133-189)||(22226665-22226721)
chr7 (61-169)||(38407450-38407558)
[»] chr3 (14 HSPs)
chr3 (56-188)||(51663466-51663598)
chr3 (17-185)||(46003425-46003593)
chr3 (57-188)||(40244624-40244756)
chr3 (17-187)||(51663250-51663420)
chr3 (57-188)||(20537925-20538056)
chr3 (56-186)||(20538150-20538280)
chr3 (56-194)||(46003241-46003379)
chr3 (76-184)||(40364194-40364301)
chr3 (56-188)||(40364040-40364172)
chr3 (125-188)||(40244873-40244936)
chr3 (68-121)||(46003393-46003446)
chr3 (76-121)||(20538076-20538121)
chr3 (76-121)||(51663399-51663444)
chr3 (105-173)||(48867469-48867537)
[»] scaffold0781 (1 HSPs)
scaffold0781 (76-187)||(5271-5382)
[»] chr6 (15 HSPs)
chr6 (76-187)||(2216814-2216925)
chr6 (56-188)||(24798624-24798756)
chr6 (61-189)||(24798843-24798971)
chr6 (17-182)||(11643754-11643919)
chr6 (18-187)||(18494911-18495079)
chr6 (93-189)||(24690353-24690449)
chr6 (76-189)||(11643985-11644097)
chr6 (57-189)||(18494732-18494862)
chr6 (101-185)||(24690607-24690691)
chr6 (76-121)||(11643898-11643943)
chr6 (80-169)||(9954825-9954914)
chr6 (61-169)||(9955590-9955698)
chr6 (70-122)||(24798770-24798822)
chr6 (68-121)||(18494878-18494931)
chr6 (68-121)||(24690504-24690557)
[»] chr5 (5 HSPs)
chr5 (17-187)||(21249362-21249532)
chr5 (188-267)||(40684826-40684905)
chr5 (71-121)||(21249511-21249561)
chr5 (57-103)||(21249579-21249625)
chr5 (140-185)||(21249633-21249678)
[»] chr4 (13 HSPs)
chr4 (56-189)||(39161286-39161419)
chr4 (56-200)||(39161503-39161647)
chr4 (56-195)||(55173469-55173608)
chr4 (76-188)||(50509364-50509476)
chr4 (56-189)||(47097016-47097146)
chr4 (68-187)||(55173334-55173454)
chr4 (57-189)||(47096798-47096928)
chr4 (76-184)||(37996068-37996176)
chr4 (140-187)||(2623451-2623498)
chr4 (86-169)||(9738136-9738219)
chr4 (68-121)||(47096947-47097001)
chr4 (69-121)||(39161436-39161488)
chr4 (95-169)||(9738937-9739011)
[»] scaffold0034 (1 HSPs)
scaffold0034 (71-135)||(108047-108111)
[»] scaffold0036 (1 HSPs)
scaffold0036 (61-170)||(61042-61151)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 10824546 - 10824718
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||| ||||||| |||||||||||||        |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10824546 cataggggatcaaattggtacataagttaacgtttttttgagagaaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattg 10824645  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 189  Q
     ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10824646 atacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatgattgaataagccta 10824718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 22683311 - 22683140
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||||||||||| |||||||||||||        ||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  22683311 cataggggaccaaattggtacataagttaacgtttttttgagagaaactaacagaaaggactaaaactagtaacaaagcaaaacataggggaccaaattg 22683212  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
     ||||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||| |||||||||||||||    
T  22683211 atacaaattatagttaggggaccaaattgagacaatcaattaagttaaaggagcgggtgattgaataagcct 22683140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 57 - 185
Target Start/End: Original strand, 37189565 - 37189693
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||    
T  37189565 agagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagataggggaccaaattgagacaatcaat 37189664  T
Q  157 taagttaagggaccggatgattgaataag 185  Q
    |||||||||||||| | ||||||||||||    
T  37189665 taagttaagggaccaggtgattgaataag 37189693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 18844629 - 18844476
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||||||||| |||||| |||||||||| ||        ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  18844629 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggaccaaattg 18844530  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggacc 170  Q
     ||||||||||||||||||||| ||||||||| ||| |||||||||||||||||    
T  18844529 atacaaattatagttaggggaccaaattgagataatcaattaagttaagggacc 18844476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 19056367 - 19056500
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||  ||||||  ||||||||||||||| ||||||||||||||  |||||||||||||| |||||||||||||||| ||||| | ||||| ||    
T  19056367 gagagaaactgacagaaatgactaaaactagtaacaaagcaaaacataggataccaaattggtacagattatagttaggggaccaaattaaaacaatcaa 19056466  T
Q  156 ttaagttaagggaccggatgattgaataagccta 189  Q
    ||||||||||||||||||||||||||||||||||    
T  19056467 ttaagttaagggaccggatgattgaataagccta 19056500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 69 - 189
Target Start/End: Original strand, 18844677 - 18844798
Alignment:
Q  69 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 167  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  18844677 agaaagaactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 18844776  T
Q  168 accggatgattgaataagccta 189  Q
    | ||| ||||||||||||||||    
T  18844777 atcgggtgattgaataagccta 18844798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 62 - 187
Target Start/End: Complemental strand, 37189492 - 37189368
Alignment:
Q  62 aactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagt 161  Q
    ||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||| ||||||||||||| ||||||||    
T  37189492 aactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaattatagttatgagaccaaattgagacaatcaattaagt 37189393  T
Q  162 taagggaccggatgattgaataagcc 187  Q
    ||| ||||||| ||||||||||||||    
T  37189392 taa-ggaccgggtgattgaataagcc 37189368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 15825737 - 15825865
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    |||||||||||  | |||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||| ||    
T  15825737 gagagaaactaataaaaaggactaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagtta--ggaccaaattgagacaatcaa 15825834  T
Q  156 ttaagttaagggaccggatgattgaataagc 186  Q
    |||||||||| |||||| |||||||||||||    
T  15825835 ttaagttaagagaccgggtgattgaataagc 15825865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 19056281 - 19056150
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| |||||||||||||||| ||||||||||| ||||||||| ||||| | ||||| ||    
T  19056281 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaatataggggaccaaattgatacaaattataattaggggaccaaattaatacaatcaa 19056182  T
Q  156 ttaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||||||| | | ||||||||||||||    
T  19056181 ttaagttaagggatcaggtgattgaataagcc 19056150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 10824496 - 10824383
Alignment:
Q  59 agaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatta 158  Q
    |||||||| ||||||| |||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||  | ||| |||||    
T  10824496 agaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattgatacaaattataattaggggaccaaattgcaataatcaatta 10824397  T
Q  159 agttaagggaccgg 172  Q
    |||||| |||||||    
T  10824396 agttaaaggaccgg 10824383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 22683357 - 22683445
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaatt 144  Q
    |||||||||||  |||||| |||||||||||||||| |||||||||||| ||||||||||||||||||| | ||||||||||| |||||    
T  22683357 gagagaaactaagagaaaggactaaaactagtaacggagcaaaacatagaggaccaaattggtacaaataaaagttaggggaccaaatt 22683445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 22683342 - 22683290
Alignment:
Q  69 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  22683342 agaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 22683290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 10824514 - 10824567
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| ||||||||||| |||| |||||||||||||||| ||||||||||||    
T  10824514 cagaaaggactaaaactaggaacggagcaaaacataggggatcaaattggtaca 10824567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 19056307 - 19056348
Alignment:
Q  80 aaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||||||||||||||| |||||||||||||||||||    
T  19056307 aaactagtaacgaagcaaaacacaggggaccaaattggtaca 19056348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 18844658 - 18844608
Alignment:
Q  71 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||| ||||||||||| |||| || |||||||||||||| |||||||||||    
T  18844658 aaaggactaaaactaggaacggagtaaaacataggggactaaattggtaca 18844608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 37189496 - 37189541
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||||||| |||| ||||||||| |||||||| ||||||||||    
T  37189496 actaaaactaggaacggagcaaaacacaggggaccgaattggtaca 37189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 7e-58; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 16973234 - 16973064
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||||||||||| |||||||||||||        ||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16973234 cataggggaccaaattggtacataagttaacgtttttatgagagaaactaacagaaagaattaaaactagtaacgaagcaaaacataggggaccaaattg 16973135  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    ||||||| |||||||||||||| ||||| ||||||| ||||||||||||||||||| ||||||||||||||    
T  16973134 gtacaaactatagttaggggaccaaattaagacaatcaattaagttaagggaccgggtgattgaataagcc 16973064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 188
Target Start/End: Complemental strand, 2916545 - 2916377
Alignment:
Q  19 taggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggt 118  Q
    ||||||||||||||| |||||||||||||        ||||||||||| ||||||| | ||||||||||||| |||||||||||||||||||||||||||    
T  2916545 taggggaccaaattggtacataagttaac-gttttttgagagaaactaacagaaaggattaaaactagtaacaaagcaaaacataggggaccaaattggt 2916447  T
Q  119 acaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||||||  ||||||||||||| |||||||||||| || ||| |||||||||||||||    
T  2916446 acaaattatagttaggggatcaaattgagacaatcaattaagttaagagatcgggtgattgaataagcct 2916377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 44594415 - 44594583
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||||||||| |||||| |||||||||| ||        ||||||||||||||||||  ||||||||||||||||||||||||||||  |||||||||||    
T  44594415 cataggggactaaattggtacataagtttacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataatggaccaaattg 44594514  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 185  Q
     ||||||||||||||||||||| ||||||||||||| |||||| |||| ||||||| ||||||||||||    
T  44594515 atacaaattatagttaggggaccaaattgagacaatcaattaaattaaaggaccgggtgattgaataag 44594583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 38982734 - 38982886
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||| |||||||||||| |||||||||||||        ||||||||||||||||||  |||||||||||||| ||||||||||||| || |||||||||    
T  38982734 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaatgaagcaaaacataaggaaccaaattg 38982833  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 169  Q
     ||||||||||||||| ||||| ||||||||||||| ||||||||||||||||    
T  38982834 atacaaattatagttaagggaccaaattgagacaatcaattaagttaagggac 38982886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 69 - 189
Target Start/End: Complemental strand, 44594367 - 44594246
Alignment:
Q  69 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg-gactaaattgagacaattaattaagttaaggg 167  Q
    ||||||||||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||  || ||||||||||||| ||||||||||||||    
T  44594367 agaaagaactaaaactagtaacagagcaaaacatagaggaccaaattgatacaaattatagttagggacaccaaattgagacaatcaattaagttaaggg 44594268  T
Q  168 accggatgattgaataagccta 189  Q
    ||||| ||||||||||||||||    
T  44594267 accgggtgattgaataagccta 44594246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 40987787 - 40987656
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| || |||  ||||||||||||||| || ||||||||| | ||| ||||||||||||||||||||||||| || ||||||||||||| |||    
T  40987787 agagaaactaacataaaagactaaaactagtaacaaatcaaaacatatgagactaaattggtacaaattatagttagggaaccaaattgagacaatcaat 40987688  T
Q  157 taagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||||||||| |||||||||    
T  40987687 taagttaagggaccggatgattaaataagcct 40987656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 16973280 - 16973412
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||  ||||||  |||||||||||||| | |||||||||||| |||||||||||  |||||||||||||||||||| ||||||||||||| ||    
T  16973280 gagagaaactgacagaaatgactaaaactagtaatggagcaaaacatagaggaccaaattgacacaaattatagttaggggaccaaattgagacaatcaa 16973379  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||   |||||||||||||||    
T  16973380 ttaagttaagggaccatgtgattgaataagcct 16973412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 11533680 - 11533794
Alignment:
Q  76 actaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggat 174  Q
    ||||||||||||||  |||||||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||| | |||||||||| |||| |||    
T  11533680 actaaaactagtaataaagcaaaacatagggggaccaaattggtacaaattatagttgggggaccaaattgagacaatcacttaagttaagagacctgat 11533779  T
Q  175 gattgaataagccta 189  Q
    |||||||||||||||    
T  11533780 gattgaataagccta 11533794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 17 - 162
Target Start/End: Original strand, 24125836 - 24125975
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||||||||||||||||||||||||          |||||||||| |||||||||||||||||||      ||||||||||| ||||||||||||    
T  24125836 cataggggaccaaattgatacataagttaatgttttttttagagaaactaacagaaagaactaaaactag------agcaaaacataagggaccaaattg 24125929  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagtt 162  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||    
T  24125930 gtacaaattatagttaggagaccaaattgagaaaattaattaagtt 24125975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 196
Target Start/End: Original strand, 13559519 - 13559657
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| || |||  |||||| ||||||||  |||||| || | |||||||| ||| |||||||||||||||||| || ||||||| ||||| |||    
T  13559519 agagaaactaacataaatgactaaatctagtaacagagcaaagcacaagggaccaa-ttgatacaaattatagttagggaaccaaattgaaacaatcaat 13559617  T
Q  157 taagttaagggaccggatgattgaataagcctacttttta 196  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  13559618 taagttaagggaccggatgattgaataagcctatttttta 13559657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 56 - 187
Target Start/End: Complemental strand, 38982688 - 38982557
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||| |||||  |||||| ||||||||||| ||||||||||||||||   |||||||||||||||||||||||||||||  | ||||||||||||| ||    
T  38982688 gagagtaactaatagaaaggactaaaactagcaacgaagcaaaacataaatgaccaaattggtacaaattatagttagggagccaaattgagacaatcaa 38982589  T
Q  156 ttaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||| ||| ||| ||||||| ||||||    
T  38982588 ttaagttaaaggatcgggtgattgattaagcc 38982557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 2916593 - 2916721
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||| || ||||||||||||  ||||||| |||| ||| ||| ||||||||||| ||||||||||||| ||||||||||||| ||    
T  2916593 gagagaaactaacagaaaggaccaaaactagtaacagagcaaaatatagaggatcaagttggtacaaataatagttaggggaccaaattgagacaatcaa 2916692  T
Q  156 ttaagttaagggaccggatgattgaataa 184  Q
    ||||||||||| |   |||||||||||||    
T  2916693 ttaagttaaggaattagatgattgaataa 2916721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 181
Target Start/End: Original strand, 40987834 - 40987987
Alignment:
Q  28 aaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattat 127  Q
    ||||||||||||||||||||        ||||||||||| ||||||  ||||||| ||| ||   ||||||| |||||||||||||||  ||||||||||    
T  40987834 aaattgatacataagttaacggttttttgagagaaactaacagaaatgactaaaattagcaatagagcaaaatataggggaccaaattaatacaaattat 40987933  T
Q  128 agttaggggactaaattgagacaattaattaagttaagggaccggatgattgaa 181  Q
    |||||| |||  |||||||||||||||||||||||||| |||||| ||||||||    
T  40987934 agttagaggatcaaattgagacaattaattaagttaagagaccgggtgattgaa 40987987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 162
Target Start/End: Original strand, 24126146 - 24126245
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| || |||| |||||||||||      ||||||||||| |||||||||||||||||||||||||||||| ||| ||||||||| ||| |||    
T  24126146 agagaaactaacataaaggactaaaactag------agcaaaacataagggaccaaattggtacaaattatagttaggagaccaaattgagaaaatcaat 24126239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 120 - 187
Target Start/End: Complemental strand, 24125737 - 24125670
Alignment:
Q  120 caaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||||||||||||  ||||||||||||| ||||||||||||||||||| ||| ||||||||||    
T  24125737 caaattatagttaggggatcaaattgagacaatcaattaagttaagggaccggttgagtgaataagcc 24125670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 16973266 - 16973213
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  16973266 cagaaaggactaaaactagtaacggagcaaaacataggggaccaaattggtaca 16973213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 44594383 - 44594436
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| ||||||||||| |||| ||||||||||||||||| |||||||||||    
T  44594383 cagaaaggactaaaactaggaacggagcaaaacataggggactaaattggtaca 44594436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 134
Target Start/End: Complemental strand, 13559434 - 13559357
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagg 134  Q
    |||||||||| ||||||  |||||||||| |||| || ||||| ||| | ||||||||||  ||||||||||||||||    
T  13559434 agagaaactaacagaaatgactaaaactaataacaaaacaaaatatatgagaccaaattgaaacaaattatagttagg 13559357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 38982702 - 38982755
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| |||||||| || |||| ||||||||||| |||||||||||||||||    
T  38982702 cagaaaggactaaaaccaggaacggagcaaaacataagggaccaaattggtaca 38982755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 2916571 - 2916526
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||| ||||| |||||||  ||||||||||||||||||||    
T  2916571 actaaaactaataacggagcaaaatgtaggggaccaaattggtaca 2916526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 24125812 - 24125857
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||| ||||  |||||||||||||||||||||||| ||||    
T  24125812 actaaaactaataacagagcaaaacataggggaccaaattgataca 24125857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 7e-55; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 13884620 - 13884488
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||| ||    
T  13884620 gagagaaactaccagaaaagactaaaactagtaacgaagcaaaacatagggggccaaattggtacaaattatagttaggggaccaaattgagacaatcaa 13884521  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    ||||||||||||||||| |||||||||||||||    
T  13884520 ttaagttaagggaccgggtgattgaataagcct 13884488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 17 - 189
Target Start/End: Complemental strand, 42126553 - 42126380
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnng-agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaatt 115  Q
    |||||||||||||||||||||||||||||||        | |||||||||||||||||| ||||||||||||| |||||||||||||||||| |||||||    
T  42126553 cataggggaccaaattgatacataagttaacgtttttttgtagagaaactaccagaaaggactaaaactagtagcgaagcaaaacatagggggccaaatt 42126454  T
Q  116 ggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 189  Q
    | |||||||||||||||| | |  ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42126453 gatacaaattatagttagagaatcaaattgagacaattaattaagttaagggaccgggtgattgaataagccta 42126380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 58 - 187
Target Start/End: Original strand, 13884706 - 13884835
Alignment:
Q  58 gagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaatt 157  Q
    ||||||||| || |||| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  13884706 gagaaactaacaaaaaggactaaaaccagtaacgaagcaaaacatagaggaccaaattggtacaaattatagttaggggactaaattgagacaatcaatt 13884805  T
Q  158 aagttaagggaccggatgattgaataagcc 187  Q
    ||||||||||||||| ||||||||||||||    
T  13884806 aagttaagggaccgggtgattgaataagcc 13884835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 29714712 - 29714541
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||||| |||||||||| |||||||||||||        ||||||||||| ||||||  | |||| |||||||| |||||||| ||||||||||||||||    
T  29714712 cataggagaccaaattggtacataagttaacgtttttacgagagaaactaacagaaatgattaaagctagtaacaaagcaaaatataggggaccaaattg 29714613  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
    ||||||| ||||||| |||||| ||||||||||||| ||||||||||||||||||| |||||||||||||||    
T  29714612 gtacaaactatagtttggggaccaaattgagacaatcaattaagttaagggaccgggtgattgaataagcct 29714541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 169
Target Start/End: Original strand, 2554066 - 2554179
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| |||||||||||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||||  ||||||||||||| ||    
T  2554066 gagagaaactaacagaaagaactaaaacaagtaacaaagcaaaacataggagaccaaattggaacaaattatagttaggggatcaaattgagacaatcaa 2554165  T
Q  156 ttaagttaagggac 169  Q
    ||||||||||||||    
T  2554166 ttaagttaagggac 2554179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 57 - 187
Target Start/End: Original strand, 42126601 - 42126731
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| ||||||  ||||||| |||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||  ||||||||| ||| |||    
T  42126601 agagaaactaacagaaatgactaaaattagtgacagagcaaaacttagaggaccaaattggtacaaattatagttaggggatcaaattgagataatcaat 42126700  T
Q  157 taagttaagggaccggatgattgaataagcc 187  Q
    |||||||||||||||| ||||||||||||||    
T  42126701 taagttaagggaccgggtgattgaataagcc 42126731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 11867898 - 11868030
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| || |||| |||||||||||| || || |||||||||| ||||||||||| ||||||||||||||| || || ||||||||||||| ||    
T  11867898 gagagaaactaacataaaggactaaaactagtgacaaatcaaaacatagaggaccaaattgatacaaattatagttaaggaaccaaattgagacaatcaa 11867997  T
Q  156 ttaagttaagggaccggatgattgaataagccta 189  Q
    ||||||||| ||||| | ||||||||||||||||    
T  11867998 ttaagttaa-ggaccaggtgattgaataagccta 11868030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 29714778 - 29714889
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    |||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| ||||| ||||| | ||||| ||||||||||||||||| | ||    
T  29714778 actaaaactagtaatgaagcaaaacatagaggaccaaattgatacaaattatagttaagggaccaaattaaaacaatcaattaagttaagggaccaggtg 29714877  T
Q  176 attgaataagcc 187  Q
    ||  ||||||||    
T  29714878 atcaaataagcc 29714889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 90 - 188
Target Start/End: Complemental strand, 43416360 - 43416262
Alignment:
Q  90 cgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
    |||| ||||||||||| ||  |||||| |||||||||||||||||||| |||||| ||||||| |||||||||||| ||||| ||||||||||||||||    
T  43416360 cgaaacaaaacataggagattaaattgatacaaattatagttaggggattaaattaagacaatcaattaagttaagagaccgaatgattgaataagcct 43416262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 14996678 - 14996758
Alignment:
Q  59 agaaactaccagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtacaaattatagttaggggac 138  Q
    |||||||| ||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||||||||||| |||||||||    
T  14996678 agaaactaacagaaaggactaaaactagtaacaaagcaaaacatagggggatcaaattggtacaaattataattaggggac 14996758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 2554052 - 2554002
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggt 118  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  2554052 cagaaaggactaaaactagtaacgaagtaaaacataggggaccaaattggt 2554002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 14996653 - 14996608
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  14996653 actaaaactagtaacgaagcaaaacataggggaccaaattagtaca 14996608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 56 - 148
Target Start/End: Original strand, 15862540 - 15862632
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgaga 148  Q
    |||||||||||   ||||| | |||||| ||||||| |||||| ||||| ||||||||||  ||||||||||||||||||||  |||||||||    
T  15862540 gagagaaactaatggaaagtattaaaaccagtaacggagcaaatcatagaggaccaaattaatacaaattatagttaggggatcaaattgaga 15862632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 29714744 - 29714691
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||||||||||    
T  29714744 cagaaaggactaaaactagtaacggagtaaaacataggagaccaaattggtaca 29714691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 26745959 - 26746067
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  ||||| |||| | |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  || ||||    
T  26745959 aaactaacagaaaggaccgaaactggtaatggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaaataag 26746058  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  26746059 ttaagggac 26746067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 26745389 - 26745281
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || ||   ||||  |||||||    
T  26745389 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttagtacaaacaattaag 26745290  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  26745289 ttaagggac 26745281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 42126577 - 42126532
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||||||  |||| |||||||||||||||||||||||| ||||    
T  42126577 actaaaactaagaacggagcaaaacataggggaccaaattgataca 42126532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 22921 - 23053
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||| |||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  22921 gagagaaactaacagaaaggactaaaactagtaacggagcaaaacatagaggatcaaattggtacaaattatagttaggggaccaaattaagacaatcaa 23020  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    ||||||||||||||||| |||||||||||||||    
T  23021 ttaagttaagggaccgggtgattgaataagcct 23053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 97; Significance: 1e-47; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 28715772 - 28715640
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || ||||| | |||||||||    
T  28715772 agagaaactaccagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggaaaccaaattaaaacaattaat 28715673  T
Q  157 taagttaagggaccggatgattgaataagccta 189  Q
    |||||||||||||||| ||||||||||| ||||    
T  28715672 taagttaagggaccgggtgattgaataaaccta 28715640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 76 - 189
Target Start/End: Complemental strand, 30862329 - 30862216
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |||    
T  30862329 actaaaactagtaacaaagcaaaatataggggaccaaattggtacaaattatagttaggggaccaaattcagacaatcaattaagttaagggaccgaatg 30862230  T
Q  176 attgaataagccta 189  Q
    ||||||||||||||    
T  30862229 attgaataagccta 30862216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 28715858 - 28715991
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  |||||||||||| ||  |||||||| ||| ||||||||||||||||||||||||||||||||| ||||| ||||||| ||    
T  28715858 gagagaaactaacagaaatgactaaaactagtgactgagcaaaacttagaggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaa 28715957  T
Q  156 ttaagttaagggaccggatgattgaataagccta 189  Q
    ||||||||||||||||| | ||||||||||||||    
T  28715958 ttaagttaagggaccgggtaattgaataagccta 28715991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 41986041 - 41985909
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| | ||||| ||||||| ||||||| |||||||||||| ||||||||||||  |||||||||||||||||||  ||||||||||||| ||    
T  41986041 gagagaaactaacggaaaggactaaaattagtaacaaagcaaaacatatgggaccaaattgaaacaaattatagttaggggatcaaattgagacaatcaa 41985942  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||| || |||||||||||||||    
T  41985941 ttaagttaagggactgggtgattgaataagcct 41985909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 56 - 196
Target Start/End: Complemental strand, 6474412 - 6474271
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaa-cataggggaccaaattggtacaaattatagttaggggactaaattgagacaatta 154  Q
    ||||||||||| ||||||  ||||||||||||||| |||||||| ||||||||||||||||| || |||||||||||||||||  ||||||||||||| |    
T  6474412 gagagaaactaacagaaaagactaaaactagtaacaaagcaaaaacataggggaccaaattgatataaattatagttaggggatcaaattgagacaatca 6474313  T
Q  155 attaagttaagggaccggatgattgaataagcctacttttta 196  Q
    |||||||||||||| | | | ||||||||||| || ||||||    
T  6474312 attaagttaagggatccggtaattgaataagcataattttta 6474271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 17 - 189
Target Start/End: Original strand, 6474458 - 6474629
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||| |||||||||||| |||||||||||||        ||||||||||| || |||| |||||||||||||||  |||||| |||| |||| ||||| |    
T  6474458 cataagggaccaaattggtacataagttaacgtttttttgagagaaactaacataaaggactaaaactagtaacagagcaaagcataagggagcaaatcg 6474557  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 189  Q
    |||||| ||||||||||| ||| ||||| ||||||| ||||||||||||||| ||| ||||||||||||||||    
T  6474558 gtacaa-ttatagttaggagaccaaattaagacaatcaattaagttaagggatcgggtgattgaataagccta 6474629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 57 - 170
Target Start/End: Original strand, 47373679 - 47373792
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| || |||| | |||||||||||||  | ||||||||| | ||| |||||||||||||||||| ||||||||| ||||||||||||| |||    
T  47373679 agagaaactaacataaaggattaaaactagtaacacatcaaaacatatgagactaaattggtacaaattataattaggggaccaaattgagacaatcaat 47373778  T
Q  157 taagttaagggacc 170  Q
    ||||||||||||||    
T  47373779 taagttaagggacc 47373792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 56 - 184
Target Start/End: Original strand, 30862436 - 30862564
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  ||||||| |||||||  ||||||||||| |||||||||||| |||||||||||||||||| || ||||||| ||||| ||    
T  30862436 gagagaaactaacagaaaagactaaaattagtaacagagcaaaacataagggaccaaattgatacaaattatagttagggaacaaaattgaaacaatcaa 30862535  T
Q  156 ttaagttaagggaccggatgattgaataa 184  Q
    || | ||||||||||   |||||||||||    
T  30862536 ttcaattaagggaccaattgattgaataa 30862564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 47373633 - 47373462
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||||||||| |||||| |||||||||||||        ||||||||||| || |||  ||||||||||| |||  ||||||||||||||||||||||||    
T  47373633 cataggggactaaattggtacataagttaac-gttttttgagagaaactaacataaatgactaaaactagcaacagagcaaaacataggggaccaaattg 47373535  T
Q  117 gtacaaat--tatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||  |||| |||| |||  ||||||||||||| |||||||||||| || ||  ||||||||||||||    
T  47373534 gtacaaattatataattagaggatcaaattgagacaatcaattaagttaagagatcgagtgattgaataagcc 47373462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 41986183 - 41986256
Alignment:
Q  115 tggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||||||||||  ||||||||||||  ||||||||||||| ||||| |||||||||||||||    
T  41986183 tggtacaaattatagttaggggatcaaattgagacaaacaattaagttaaggaaccgggtgattgaataagcct 41986256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 38408121 - 38408229
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  38408121 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 38408220  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  38408221 ttaagggac 38408229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 6271188 - 6271296
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  |||||||||||| |||||||| ||  |||| || ||||||||||||||| ||||||||| || |||  | ||  |||||||    
T  6271188 aaactaacagaaaggaccgaaactagtaacggagcaaaacttaaaggacgaatttggtacaaattatatttaggggaccaatttggtagaaacaattaag 6271287  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  6271288 ttaagggac 6271296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 41986058 - 41986108
Alignment:
Q  71 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||| ||||||| ||| |||| |||||||||||||||||||||||||||||    
T  41986058 aaaggactaaaattagcaacggagcaaaacataggggaccaaattggtaca 41986108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 6270326 - 6270237
Alignment:
Q  80 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 169  Q
    |||||||||||| ||||| || ||| |||| || ||||||||||||||| ||||| ||| || ||   |||| |||||||||||||||||    
T  6270326 aaactagtaacggagcaacacttagaggacgaatttggtacaaattatatttaggcgaccaatttagtacaaataattaagttaagggac 6270237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 47373657 - 47373612
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  47373657 actaaaactaataacggagcaaaacataggggactaaattggtaca 47373612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 133 - 189
Target Start/End: Original strand, 22226665 - 22226721
Alignment:
Q  133 ggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 189  Q
    |||||| ||||||||||||| ||||||| ||||||| | | ||||||||||||||||    
T  22226665 ggggaccaaattgagacaatcaattaagctaagggatcaggtgattgaataagccta 22226721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 38407558 - 38407450
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||   ||||||    
T  38407558 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaaccattaag 38407459  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  38407458 ttaagggac 38407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 56 - 188
Target Start/End: Original strand, 51663466 - 51663598
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  |||||||||||||||  |||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| ||    
T  51663466 gagagaaactaacagaaatgactaaaactagtaacatagcaaaacatagaggaccaaattgctacaaattatagttaggggaccaaattgagacaatcaa 51663565  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||||||||||||||||||||    
T  51663566 ttaagttaagggaccggatgattgaataagcct 51663598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 17 - 185
Target Start/End: Original strand, 46003425 - 46003593
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||| ||||||||||| |||||||||||||         |||||||||||||||||| |||||||||||||| ||||||||||| |||||| |||||||    
T  46003425 catagaggaccaaattggtacataagttaacgttttttttagagaaactaccagaaaggactaaaactagtaatgaagcaaaacaaaggggatcaaattg 46003524  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 185  Q
    ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| ||||||| ||||||    
T  46003525 gtacaaattttagttaggggaccaaattgagacaatcaattaagttaagggaccagatgattaaataag 46003593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 40244756 - 40244624
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacatagggga-ccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    |||||||||| ||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||| ||    
T  40244756 agagaaactaacagaaatgactaaaactagtaacaaagcaaaacataggggaaccaaattggtacaaattatagttaagggaccaaattgagacaatcaa 40244657  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    ||||||||||||| |||||||||||||||||||    
T  40244656 ttaagttaagggatcggatgattgaataagcct 40244624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 51663420 - 51663250
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||||||||||  |||||||||||||        ||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||    
T  51663420 cataggggaccaaattagtacataagttaacgtttttttgagagaaactaccagaaatgactaaaactagtaacgaagcaaaacataggggactaaattg 51663321  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
     |||||||||||||||| |||| | ||| | ||||| |||||||||||| |||||| ||||| ||||||||    
T  51663320 atacaaattatagttagtggaccatattaaaacaatcaattaagttaagagaccgggtgattaaataagcc 51663250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 57 - 188
Target Start/End: Complemental strand, 20538056 - 20537925
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    ||||||||||  |||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||  ||||||| |  || |||    
T  20538056 agagaaactaatagaaaggactaaaactagtaatgaagcaaaacataggggaccaaattggaacaaattatagttaggggatcaaattgataatatcaat 20537957  T
Q  157 taagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||| ||||||| |||| ||||    
T  20537956 taagttaagggaccagatgattcaataggcct 20537925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 186
Target Start/End: Original strand, 20538150 - 20538280
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  |||||||||||||||| ||||||||||||   || |||||| ||||||||||||||||||||  ||||||||||||| ||    
T  20538150 gagagaaactaacagaaatgactaaaactagtaacggagcaaaacatagataactaaattgatacaaattatagttaggggatcaaattgagacaatcaa 20538249  T
Q  156 ttaagttaagggaccggatgattgaataagc 186  Q
    |||| |||| ||||||| |||||||||||||    
T  20538250 ttaaattaaaggaccgggtgattgaataagc 20538280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 56 - 194
Target Start/End: Complemental strand, 46003379 - 46003241
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| || |||| ||||||||| |||||  | || ||||||| ||||||||||| ||||||||||||||||||||| ||||| | ||||| ||    
T  46003379 gagagaaactaacaaaaaggactaaaacttgtaacagaacagaacatagaggaccaaattgatacaaattatagttaggggaccaaattaaaacaatcaa 46003280  T
Q  156 ttaagttaagggaccggatgattgaataagcctactttt 194  Q
    ||||||||| ||||||| ||||||||||| |||||||||    
T  46003279 ttaagttaaaggaccgggtgattgaataaacctactttt 46003241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 184
Target Start/End: Original strand, 40364194 - 40364301
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    |||||||||||||||| | |||||||||||| | ||||||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||||   ||    
T  40364194 actaaaactagtaacggaacaaaacataggg-atcaaattggtacaaattatagttaggagaccaaattgaaacaatcaattaagttaagggaccaagtg 40364292  T
Q  176 attgaataa 184  Q
    |||||||||    
T  40364293 attgaataa 40364301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 40364172 - 40364040
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| || |||  |||||||||| ||||| ||||||| | |||||| ||||||| ||||||||||| ||| ||||| ||||| ||| ||| ||    
T  40364172 gagagaaactaacaaaaatgactaaaactaataacggagcaaaatacaggggatcaaattgatacaaattataattatgggaccaaattaagataatcaa 40364073  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||  || |||| ||||||||||    
T  40364072 ttaagttaagggattgggtgatcgaataagcct 40364040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 40244873 - 40244936
Alignment:
Q  125 tatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||| ||||||||||||| |||||||||||||||| || |||||||||||||||    
T  40244873 tatagttaggggaccaaattgagacaatcaattaagttaagggacggggtgattgaataagcct 40244936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 46003393 - 46003446
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||    
T  46003393 cagaaaggactaaaactagtaacgaagcaaaacatagaggaccaaattggtaca 46003446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 20538121 - 20538076
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  20538121 actaaaactaataacaaagcaaaacataggggaccaaattggtaca 20538076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 51663444 - 51663399
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||||||| |||  ||||||||||||||||||||||| |||||    
T  51663444 actaaaactaggaacagagcaaaacataggggaccaaattagtaca 51663399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 48867469 - 48867537
Alignment:
Q  105 gggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccgga 173  Q
    ||||||||||||  |||  | ||||||| ||||| ||||||||| ||| || |||||||||||||||||    
T  48867469 gggaccaaattgacacacttaatagttaagggaccaaattgagaaaataaaataagttaagggaccgga 48867537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0781 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: scaffold0781
Description:

Target: scaffold0781; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 5271 - 5382
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  5271 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 5370  T
Q  176 attgaataagcc 187  Q
    ||||||||||||    
T  5371 attgaataagcc 5382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 2216814 - 2216925
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2216814 actaaaactaataacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattgagacaatcaattaagttaagggaccggatg 2216913  T
Q  176 attgaataagcc 187  Q
    ||||||||||||    
T  2216914 attgaataagcc 2216925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 188
Target Start/End: Complemental strand, 24798756 - 24798624
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||| ||||  ||    
T  24798756 gagagaaactaacagaaatgactaaaactagtaacgaagcaaaacatagaggaccaaattggtacaaattatagtcaggggaccaaattgaaacaaccaa 24798657  T
Q  156 ttaagttaagggaccggatgattgaataagcct 188  Q
    |||||||||||||||| || |||||||||||||    
T  24798656 ttaagttaagggaccgaataattgaataagcct 24798624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 61 - 189
Target Start/End: Original strand, 24798843 - 24798971
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||| ||||||| ||||||     
T  24798843 aaactactagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattgatacaaattatagttaggggatcaaattaagacaatcaattaat 24798942  T
Q  161 ttaagggaccggatgattgaataagccta 189  Q
    |||||||| ||| ||||||||||||||||    
T  24798943 ttaagggatcgggtgattgaataagccta 24798971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 182
Target Start/End: Complemental strand, 11643919 - 11643754
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    ||||||||||||||||| |||||||||||||         |||||||||| |||| || ||||||||||||||| || |||||||||||| |||||||||    
T  11643919 cataggggaccaaattggtacataagttaacgttttttttagagaaactaacagagaggactaaaactagtaacaaaacaaaacatagggaaccaaattg 11643820  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaat 182  Q
     ||||||||||||||||||||  ||||||||||||| |||||| |||||||||||| |||||||||    
T  11643819 atacaaattatagttaggggatcaaattgagacaatcaattaaattaagggaccgggtgattgaat 11643754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 187
Target Start/End: Original strand, 18494911 - 18495079
Alignment:
Q  18 ataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattgg 117  Q
    |||||||||||||||| |||||||||||||         |||||||||| |||||||||||||||||| ||||| | ||||| ||||||||||||||||     
T  18494911 ataggggaccaaattgctacataagttaacgttttttt-agagaaactaacagaaagaactaaaactaataacggatcaaaatataggggaccaaattga 18495009  T
Q  118 tacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||||||||| ||||  ||||| | | ||| ||||||||||||||||  ||||||||||||||||    
T  18495010 tacaaattatagttaagggatcaaattaatataatcaattaagttaagggactagatgattgaataagcc 18495079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 93 - 189
Target Start/End: Complemental strand, 24690449 - 24690353
Alignment:
Q  93 agcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagccta 189  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| ||||||||||||||||    
T  24690449 agcaaaacatagaggaccaaattggtacaaattatagtaaggggaccaaattgagacaatcaattaagttaagagaccgggtgattgaataagccta 24690353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 76 - 189
Target Start/End: Original strand, 11643985 - 11644097
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttagggg-actaaattgagacaattaattaagttaagggaccggat 174  Q
    ||||||||||||||| ||| ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||||||||||||| |    
T  11643985 actaaaactagtaacaaag-aaaacataggg-accaaattgatacaaattatagttagggggaccaaattgagacaatcaattaagttaagggaccgggt 11644082  T
Q  175 gattgaataagccta 189  Q
    |||||||||||||||    
T  11644083 gattgaataagccta 11644097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 18494862 - 18494732
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||||| || |||| ||||||||||||||| ||||||| |||||||||||||| ||||||||||||||| ||||| || ||||||||||||| |||    
T  18494862 agagaaactaacaaaaaggactaaaactagtaacaaagcaaa-cataggggaccaaaatggtacaaattatagctaggg-accaaattgagacaatcaat 18494765  T
Q  157 taagttaagggaccggatgattgaataagccta 189  Q
     |||||||||||||   ||||||||||||||||    
T  18494764 aaagttaagggaccatgtgattgaataagccta 18494732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 24690607 - 24690691
Alignment:
Q  101 ataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataag 185  Q
    ||||||||||||||||||||||||||||||||||| || ||||| | ||||| ||||||||||||||| ||| ||||||||||||    
T  24690607 ataggggaccaaattggtacaaattatagttagggaaccaaattaaaacaatcaattaagttaagggatcgggtgattgaataag 24690691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 121
Target Start/End: Complemental strand, 11643943 - 11643898
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  11643943 actaaaactagtaacggagcaaaacataggggaccaaattggtaca 11643898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 169
Target Start/End: Complemental strand, 9954914 - 9954825
Alignment:
Q  80 aaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 169  Q
    ||||| |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9954914 aaactggtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9954825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 61 - 169
Target Start/End: Original strand, 9955590 - 9955698
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  ||||| |||||  |||||||| ||| |||  || ||||||||||||||| ||||||||| || |||| ||||  |||||||    
T  9955590 aaactaacagaaaggaccgaaactggtaacagagcaaaacttagaggatgaatttggtacaaattatatttaggggaccaatttgatacaaacaattaag 9955689  T
Q  161 ttaagggac 169  Q
    |||||||||    
T  9955690 ttaagggac 9955698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 70 - 122
Target Start/End: Original strand, 24798770 - 24798822
Alignment:
Q  70 gaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaa 122  Q
    ||||| ||||||||||| |||| |||||||||||||||||||||||| |||||    
T  24798770 gaaaggactaaaactaggaacggagcaaaacataggggaccaaattgatacaa 24798822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 18494878 - 18494931
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||||||||||||||||||   ||| ||| |||||||||||||||| ||||    
T  18494878 cagaaagaactaaaactagtaatagagcgaaatataggggaccaaattgctaca 18494931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 24690504 - 24690557
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    ||||||| |||||||||| |||   ||||||||||||| |||||||||||||||    
T  24690504 cagaaaggactaaaactattaatagagcaaaacataggagaccaaattggtaca 24690557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 94; Significance: 6e-46; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 21249532 - 21249362
Alignment:
Q  17 cataggggaccaaattgatacataagttaacannnnnnngagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattg 116  Q
    |||| |||||||||||| ||||||||||||||       ||||||||||| ||||||| | |||||||||||||||||||||||||||||||| ||||||    
T  21249532 cataagggaccaaattggtacataagttaacatttttttgagagaaactaacagaaaggattaaaactagtaacgaagcaaaacataggggactaaattg 21249433  T
Q  117 gtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    |||||| ||||| ||||||||| ||||||||||||| ||||| | ||||||||| | ||||||||||||||    
T  21249432 gtacaatttataattaggggaccaaattgagacaatcaattacggtaagggaccaggtgattgaataagcc 21249362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 188 - 267
Target Start/End: Complemental strand, 40684905 - 40684826
Alignment:
Q  188 tactttttataataaaaaatcacttttatacttcctcatggtaatttttcagtgtaatttatggcgtggtgtggccttat 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40684905 tactttttataataaaaaatcacttttatacttcctcatggtaatttttcagtgtaatttatggcgtggtgtggccttat 40684826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 71 - 121
Target Start/End: Complemental strand, 21249561 - 21249511
Alignment:
Q  71 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||| |||||||||||||||  ||||||||||| |||||||||||||||||    
T  21249561 aaaggactaaaactagtaacagagcaaaacataagggaccaaattggtaca 21249511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 103
Target Start/End: Original strand, 21249579 - 21249625
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacata 103  Q
    |||||||||| ||||||| |||||||||| ||||| |||||||||||    
T  21249579 agagaaactaacagaaaggactaaaactaataacggagcaaaacata 21249625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 21249633 - 21249678
Alignment:
Q  140 aaattgagacaattaattaagttaagggaccggatgattgaataag 185  Q
    ||||| ||||||| ||||||||||||||||  ||||||||||||||    
T  21249633 aaattaagacaatcaattaagttaagggacaagatgattgaataag 21249678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 56 - 189
Target Start/End: Complemental strand, 39161419 - 39161286
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| | ||    
T  39161419 gagagaaactttcagaaaggactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacattcaa 39161320  T
Q  156 ttaagttaagggaccggatgattgaataagccta 189  Q
    ||||||||| ||| ||| ||||||||||||||||    
T  39161319 ttaagttaaaggatcgggtgattgaataagccta 39161286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 56 - 200
Target Start/End: Original strand, 39161503 - 39161647
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| ||||||| |||||||||| ||||| |||||||||||| |||| |||||||||||||||||||||||||||| ||||| | ||||| ||    
T  39161503 gagagaaactaacagaaaggactaaaactaataacggagcaaaacatagaggactaaattggtacaaattatagttaggggaccaaattaaaacaatcaa 39161602  T
Q  156 ttaagttaagggaccggatgattgaataagcctactttttataat 200  Q
    ||||||||||| |||||||| |||||||||||||  |||||||||    
T  39161603 ttaagttaaggaaccggatggttgaataagcctagattttataat 39161647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 55173469 - 55173608
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| || |||  |||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| ||  ||||||||||||| ||    
T  55173469 gagagaaactagcaaaaaagactaaaacaagtaacaaagcaaagcataggggaccaaattggtacaaattatagttaggagatcaaattgagacaatcaa 55173568  T
Q  156 ttaagttaagggaccggatgattgaataagcctacttttt 195  Q
    ||||||||||||||||| |||||||||||||||| |||||    
T  55173569 ttaagttaagggaccgggtgattgaataagcctaattttt 55173608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 76 - 188
Target Start/End: Original strand, 50509364 - 50509476
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||| | ||||    
T  50509364 actaaaattagtaacaaagcaaaacataggggaccaaattggtacaaattatagttaggggaccaaattaagacaatcaattaagttaagggatcagatg 50509463  T
Q  176 attgaataagcct 188  Q
    |||||||||||||    
T  50509464 attgaataagcct 50509476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 56 - 189
Target Start/End: Original strand, 47097016 - 47097146
Alignment:
Q  56 gagagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaa 155  Q
    ||||||||||| || |||  ||||||||||||||||  |||||||||||   | |||||||||||||||||||||||| |||||||||||||||||| ||    
T  47097016 gagagaaactaacaaaaatgactaaaactagtaacggggcaaaacatag---atcaaattggtacaaattatagttagaggactaaattgagacaatcaa 47097112  T
Q  156 ttaagttaagggaccggatgattgaataagccta 189  Q
    |||||||||| || ||||||||||||||||||||    
T  47097113 ttaagttaagagatcggatgattgaataagccta 47097146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 68 - 187
Target Start/End: Complemental strand, 55173454 - 55173334
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacatagggg-accaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagg 166  Q
    ||||||| |||||||||||||||| ||||||| ||||||| ||||||||  ||||||||||||||||||||| ||||| ||||||| |||||||||||||    
T  55173454 cagaaaggactaaaactagtaacggagcaaaatatagggggaccaaattaatacaaattatagttaggggaccaaattaagacaatcaattaagttaagg 55173355  T
Q  167 gaccggatgattgaataagcc 187  Q
     |||||||||| |||||||||    
T  55173354 aaccggatgatcgaataagcc 55173334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 47096928 - 47096798
Alignment:
Q  57 agagaaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaat 156  Q
    |||||||| | || |||| |||||||| ||||||||||||||||||||||| | ||||||||||||||||| |||||||||| ||||||||| ||| |||    
T  47096928 agagaaacaaacataaaggactaaaacaagtaacgaagcaaaacatagggggc-aaattggtacaaattat-gttaggggaccaaattgagataatcaat 47096831  T
Q  157 taagttaagggaccggatgattgaataagccta 189  Q
    |||||||||||| | | ||||||||||||||||    
T  47096830 taagttaagggatcaggtgattgaataagccta 47096798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 76 - 184
Target Start/End: Complemental strand, 37996176 - 37996068
Alignment:
Q  76 actaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggaccggatg 175  Q
    |||||||||| |||| ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||| | || | |||||||| | | ||    
T  37996176 actaaaactaataacaaagcaaaacataggggaccaaattgatacaaattatagttaagggaccaaattgaaacaatcattttaattaagggatcaggtg 37996077  T
Q  176 attgaataa 184  Q
    |||||||||    
T  37996076 attgaataa 37996068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 187
Target Start/End: Original strand, 2623451 - 2623498
Alignment:
Q  140 aaattgagacaattaattaagttaagggaccggatgattgaataagcc 187  Q
    ||||||||||||| ||||||||||||||||||  ||||||||||||||    
T  2623451 aaattgagacaatcaattaagttaagggaccgagtgattgaataagcc 2623498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 9738219 - 9738136
Alignment:
Q  86 gtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 169  Q
    |||||| |||||||| ||| |||| || ||||||||||||||| ||||||||| || |||  ||||  ||||||||||||||||    
T  9738219 gtaacggagcaaaacttagaggacgaatttggtacaaattatatttaggggaccaatttggtacaaacaattaagttaagggac 9738136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 47097001 - 47096947
Alignment:
Q  68 cagaaagaactaaaactagtaacgaagcaaaacata-ggggaccaaattggtaca 121  Q
    ||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||    
T  47097001 cagaaaggactaaaactagtaatggagcaaaacatagggggaccaaattggtaca 47096947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 39161488 - 39161436
Alignment:
Q  69 agaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtaca 121  Q
    |||||| ||||||||||| |||| | ||||||||| |||||||||||||||||    
T  39161488 agaaaggactaaaactaggaacggatcaaaacatatgggaccaaattggtaca 39161436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 169
Target Start/End: Original strand, 9738937 - 9739011
Alignment:
Q  95 caaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaagttaagggac 169  Q
    |||||| ||| |||| || ||||||||||||||| ||||||||| || |||| ||||  ||| ||||||||||||    
T  9738937 caaaacttagaggacgaatttggtacaaattatatttaggggaccaatttgatacaaacaatcaagttaagggac 9739011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 108111 - 108047
Alignment:
Q  71 aaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggg 135  Q
    |||| |||||||||||||| | ||||||||| || ||||||||||| |||||||||| |||||||    
T  108111 aaaggactaaaactagtaatggagcaaaacacagaggaccaaattgatacaaattatggttaggg 108047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 170
Target Start/End: Original strand, 61042 - 61151
Alignment:
Q  61 aaactaccagaaagaactaaaactagtaacgaagcaaaacataggggaccaaattggtacaaattatagttaggggactaaattgagacaattaattaag 160  Q
    |||||| ||||||| ||  |||||  ||||| |||||||| ||| |||| || ||||||||||||| | ||| ||||| || |||  ||||  |||||||    
T  61042 aaactaacagaaaggacctaaactgataacggagcaaaacttagaggacgaatttggtacaaattaaatttaagggaccaatttggtacaaacaattaag 61141  T
Q  161 ttaagggacc 170  Q
    ||||||||||    
T  61142 ttaagggacc 61151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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