View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_low_19 (Length: 260)

Name: NF10349_low_19
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_low_19
NF10349_low_19
[»] chr5 (7 HSPs)
chr5 (10-243)||(42582128-42582361)
chr5 (99-156)||(3280711-3280768)
chr5 (99-140)||(25461313-25461354)
chr5 (107-171)||(4014429-4014492)
chr5 (99-139)||(17258880-17258920)
chr5 (107-159)||(34160745-34160796)
chr5 (63-171)||(42582914-42583021)
[»] chr3 (6 HSPs)
chr3 (99-200)||(2128255-2128358)
chr3 (99-171)||(39602207-39602278)
chr3 (99-163)||(13804787-13804850)
chr3 (95-139)||(33120112-33120156)
chr3 (100-156)||(33883748-33883803)
chr3 (96-136)||(52619039-52619079)
[»] chr1 (12 HSPs)
chr1 (120-200)||(15784299-15784381)
chr1 (99-140)||(1509962-1510003)
chr1 (107-168)||(27820342-27820402)
chr1 (99-171)||(7136995-7137066)
chr1 (99-200)||(10744271-10744374)
chr1 (107-156)||(51695500-51695548)
chr1 (99-139)||(6292526-6292566)
chr1 (99-139)||(25479614-25479654)
chr1 (99-139)||(30815650-30815690)
chr1 (99-139)||(33975603-33975643)
chr1 (99-139)||(37593681-37593721)
chr1 (99-139)||(43338149-43338189)
[»] chr4 (1 HSPs)
chr4 (99-156)||(825487-825543)
[»] chr8 (6 HSPs)
chr8 (99-159)||(21653095-21653154)
chr8 (99-137)||(43368697-43368735)
chr8 (99-136)||(37353188-37353225)
chr8 (99-156)||(37353246-37353302)
chr8 (100-140)||(11121807-11121847)
chr8 (99-139)||(20672783-20672823)
[»] chr6 (2 HSPs)
chr6 (99-139)||(17770451-17770491)
chr6 (119-159)||(837233-837272)
[»] chr2 (5 HSPs)
chr2 (99-139)||(9595291-9595331)
chr2 (109-163)||(20952365-20952418)
chr2 (106-139)||(43985007-43985040)
chr2 (103-171)||(18179241-18179308)
chr2 (99-171)||(29316772-29316843)


Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 10 - 243
Target Start/End: Complemental strand, 42582361 - 42582128
Alignment:
Q  10 cacagaacgtatgaatgtcagtagatactctcagataagtcaatccagacagcgcctaattaatccaataaaatggtgaatgcagtaatttatgacatgt 109  Q
    |||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  42582361 cacaaaacgtacgtatgtcagtagatactctcagataagtcaatccagacagcgcctaattaatccaataaaatggtgaatgcagtagtttatgacatgt 42582262  T
Q  110 tcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagcttagtaaacaatttaactttattttatcttttagcttatac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42582261 tcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagcttagtaaacaatttaactttattttatcttttagcttatac 42582162  T
Q  210 atttgctataaacttcaaattaaactatttatcc 243  Q
    ||||||||||||||||||||||||||||||||||    
T  42582161 atttgctataaacttcaaattaaactatttatcc 42582128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 3280711 - 3280768
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagct 156  Q
    ||||||||| ||||| | || |||| || |||||||||||||||||||||||||||||    
T  3280711 ttatgacatcttcataagctctttttagtttattttcataaagttctcaaagatagct 3280768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 25461313 - 25461354
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaa 140  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  25461313 ttatgacatgttcattagctgttttcagcttattttcataaa 25461354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 4014429 - 4014492
Alignment:
Q  107 tgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta 171  Q
    ||||||| | || |||||||||||||||||| |||||||| ||||||||| || ||| |||||||    
T  4014429 tgttcataagctgttttcagcttattttcat-aagttctccaagatagcttatgaaaacagctta 4014492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 17258880 - 17258920
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  17258880 ttatgacatgttcataagctgttttcagcttattttcataa 17258920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 107 - 159
Target Start/End: Complemental strand, 34160796 - 34160745
Alignment:
Q  107 tgttcattaactattttcagcttattttcataaagttctcaaagatagctaat 159  Q
    ||||||| |||| |||||||||||||||||| |||||||| |||||| |||||    
T  34160796 tgttcataaactgttttcagcttattttcat-aagttctccaagatatctaat 34160745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 171
Target Start/End: Complemental strand, 42583021 - 42582914
Alignment:
Q  63 gcctaattaatccaataaaatggtgaatgcagtaatttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaa 162  Q
    ||||||||||| ||||||| |  | |||||| ||  || | |||||||||| |||| |||| ||||||||||||| |||||||| || |||||| | |||    
T  42583021 gcctaattaattcaataaattaataaatgcaatagcttctaacatgttcataaactgttttgagcttattttcat-aagttctccaatatagcttacaaa 42582923  T
Q  163 accagctta 171  Q
    | |||||||    
T  42582922 aacagctta 42582914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 2128255 - 2128358
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta--gtaaa-caatttaactttattttat 195  Q
    |||| |||||||||| | || |||||||||||||||||||  ||||| |||||| ||| || ||| |||||||  ||||| |||||||||||||||||||    
T  2128255 ttataacatgttcataagctgttttcagcttattttcatac-gttctaaaagatggcttatgaaaacagcttacagtaaaacaatttaactttattttat 2128353  T
Q  196 ctttt 200  Q
    |||||    
T  2128354 ctttt 2128358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 39602207 - 39602278
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta 171  Q
    ||||||||||||||| || | |||||| ||||||||||| |||||||||||||||||| || ||| |||||||    
T  39602207 ttatgacatgttcataaattgttttcaacttattttcat-aagttctcaaagatagcttatgaaaacagctta 39602278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 13804850 - 13804787
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaa 163  Q
    ||||||||||| ||| | || |||||| ||||||||| ||| |||||||| ||||||||||||||    
T  13804850 ttatgacatgtccataagctgttttcaacttattttcttaa-gttctcaacgatagctaataaaa 13804787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 33120156 - 33120112
Alignment:
Q  95 taatttatgacatgttcattaactattttcagcttattttcataa 139  Q
    |||||||||||| |||||| |||||| || |||||||||||||||    
T  33120156 taatttatgacaagttcataaactatctttagcttattttcataa 33120112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 33883748 - 33883803
Alignment:
Q  100 tatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagct 156  Q
    |||||||||||||| |  | |||||||||||||||||| |||||||| |||||||||    
T  33883748 tatgacatgttcataagttgttttcagcttattttcat-aagttctctaagatagct 33883803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 52619079 - 52619039
Alignment:
Q  96 aatttatgacatgttcattaactattttcagcttattttca 136  Q
    |||||||||||||||||| | ||||||||| ||||||||||    
T  52619079 aatttatgacatgttcataagctattttcaccttattttca 52619039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 120 - 200
Target Start/End: Complemental strand, 15784381 - 15784299
Alignment:
Q  120 ttttcagcttattttcataaagttctcaaagatagctaataaaaccagctta---gtaaacaatttaactttattttatctttt 200  Q
    |||| |||||||||||| || |||||| ||||||||| ||||||||||||||   | ||||||||||||||||||||| |||||    
T  15784381 tttttagcttattttcacaa-gttctccaagatagcttataaaaccagcttatacgaaaacaatttaactttattttacctttt 15784299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Original strand, 1509962 - 1510003
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaa 140  Q
    ||||||||||||||||| || |||||||||||||||||||||    
T  1509962 ttatgacatgttcattagctgttttcagcttattttcataaa 1510003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 168
Target Start/End: Original strand, 27820342 - 27820402
Alignment:
Q  107 tgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagc 168  Q
    ||||||| | |||||||||||||||||||||||| ||||| ||||||||| |||||| ||||    
T  27820342 tgttcataagctattttcagcttattttcataaa-ttctccaagatagcttataaaaacagc 27820402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 7136995 - 7137066
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta 171  Q
    ||||||||| ||||| |  |||||||||||||||||||| |||||||| ||||||||| || ||| |||||||    
T  7136995 ttatgacatattcataagttattttcagcttattttcat-aagttctccaagatagcttatgaaaacagctta 7137066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 200
Target Start/End: Complemental strand, 10744374 - 10744271
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta---gtaaacaatttaactttattttat 195  Q
    ||||| ||||||||| | || |||||| |||||||| |||| |||||| |||| |||| || ||| |||||||   | |||||||| |||||||||||||    
T  10744374 ttatggcatgttcataagctgttttcatcttatttttataa-gttctctaagacagcttatgaaaacagcttataggaaaacaattcaactttattttat 10744276  T
Q  196 ctttt 200  Q
    |||||    
T  10744275 ctttt 10744271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 107 - 156
Target Start/End: Original strand, 51695500 - 51695548
Alignment:
Q  107 tgttcattaactattttcagcttattttcataaagttctcaaagatagct 156  Q
    ||||||| | |||||||||||||||||||||||| ||||| |||||||||    
T  51695500 tgttcataagctattttcagcttattttcataaa-ttctccaagatagct 51695548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 6292566 - 6292526
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  6292566 ttatgacatgttcataagctgttttcagcttattttcataa 6292526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 25479654 - 25479614
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    |||||||||||||||||  | ||||||||||||||||||||    
T  25479654 ttatgacatgttcattagttgttttcagcttattttcataa 25479614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 30815650 - 30815690
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| || | ||||||||||||||||||||    
T  30815650 ttatgacatgttcataaaatgttttcagcttattttcataa 30815690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 33975643 - 33975603
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    |||||| |||| ||| |||||||||||||||||||||||||    
T  33975643 ttatgatatgtccataaactattttcagcttattttcataa 33975603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 37593681 - 37593721
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  37593681 ttatgacatgttcataagctgttttcagcttattttcataa 37593721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 43338189 - 43338149
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| | ||||||||||| |||||||||||    
T  43338189 ttatgacatgttcataatctattttcagcctattttcataa 43338149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 825487 - 825543
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagct 156  Q
    |||||||||| ||||||||| |||||||||||||||||| |||||||| || ||||||    
T  825487 ttatgacatgctcattaactgttttcagcttattttcat-aagttctccaaaatagct 825543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 159
Target Start/End: Complemental strand, 21653154 - 21653095
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaat 159  Q
    |||||||| |||||| | ||||||||||||||||||||| ||| |||| ||||||||||||    
T  21653154 ttatgacacgttcataagctattttcagcttattttcat-aagctctccaagatagctaat 21653095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 137
Target Start/End: Original strand, 43368697 - 43368735
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcat 137  Q
    ||||||||||||||||| ||||||||| |||||||||||    
T  43368697 ttatgacatgttcattagctattttcaacttattttcat 43368735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 136
Target Start/End: Original strand, 37353188 - 37353225
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttca 136  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  37353188 ttatgacatattcataaactattttcagcttattttca 37353225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 37353246 - 37353302
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagct 156  Q
    ||||||||| ||||| |||| ||||||| |||||||||| ||| ||||||||||||||    
T  37353246 ttatgacatattcataaactgttttcagattattttcat-aagctctcaaagatagct 37353302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 11121847 - 11121807
Alignment:
Q  100 tatgacatgttcattaactattttcagcttattttcataaa 140  Q
    ||||||||| |||||| ||||||||||||||||| ||||||    
T  11121847 tatgacatgatcattatctattttcagcttatttccataaa 11121807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 20672823 - 20672783
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| | || ||||||||||||||||||||    
T  20672823 ttatgacatgttcataagctgttttcagcttattttcataa 20672783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 17770451 - 17770491
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  17770451 ttatgacatgttcataaactattttcaacttattttcataa 17770491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 837233 - 837272
Alignment:
Q  119 attttcagcttattttcataaagttctcaaagatagctaat 159  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  837233 attttcagcttattttcat-aagttctccaagatagctaat 837272  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 9595331 - 9595291
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataa 139  Q
    ||||||||||| ||| |||||||||||||||||||||||||    
T  9595331 ttatgacatgtccatgaactattttcagcttattttcataa 9595291  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 163
Target Start/End: Complemental strand, 20952418 - 20952365
Alignment:
Q  109 ttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaa 163  Q
    |||||||||| |||||| ||||||||||| |||||||| || |||||||||||||    
T  20952418 ttcattaacttttttcaacttattttcat-aagttctccaatatagctaataaaa 20952365  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 106 - 139
Target Start/End: Original strand, 43985007 - 43985040
Alignment:
Q  106 atgttcattaactattttcagcttattttcataa 139  Q
    |||||||||| |||||||||||||||||||||||    
T  43985007 atgttcattatctattttcagcttattttcataa 43985040  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 171
Target Start/End: Original strand, 18179241 - 18179308
Alignment:
Q  103 gacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta 171  Q
    ||||||| ||||| ||||||||||||||||||| | |||||||| | ||||||| || ||| |||||||    
T  18179241 gacatgtccattagctattttcagcttattttcgt-aagttctccaggatagcttatgaaagcagctta 18179308  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 29316772 - 29316843
Alignment:
Q  99 ttatgacatgttcattaactattttcagcttattttcataaagttctcaaagatagctaataaaaccagctta 171  Q
    ||||||||||||||| |  | |||||||||||||| ||| |||||||| ||||||||| || ||| |||||||    
T  29316772 ttatgacatgttcataagttcttttcagcttatttccat-aagttctccaagatagctgatgaaaacagctta 29316843  T

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