View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_2 (Length: 534)
Name: NF10349_low_2
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 7 - 495
Target Start/End: Original strand, 402250 - 402738
Alignment:
| Q |
7 |
cgccggttgtccattagccgccacactctcccaatcccaccgcgttctcatcctcgaacgcggcggagtcatccatggaaaactcaacctaatgaaccaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
402250 |
cgccggttgtccattagccgccacactctcccaatcccaccgcgttctcatcctcgaacgcggcggagtcatccatggaaaactcaacctaatgaaccaa |
402349 |
T |
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| Q |
107 |
gaaggtttcttgaacacactcttgagcgctaccgcaaacaacgccaacaacgaagattcaccggcgcagtccttcgtttctgaagacggtgttctcaatg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
402350 |
gaaggtttcttgaacacactcttgagcgctaccgcaaacaacgccaacaacgaagattcaccggcgcaatctttcgtttctgaagacggtgttctcaatg |
402449 |
T |
|
| Q |
207 |
ctcgtggccgtgttcttggtggtagtagtgcgattaacgctgggttctatagtcgtgctgatcgtgaattctttacgaaatctggtcttaattgggattt |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
402450 |
ctcgtggccgtgttcttggtggtagtagtgcgattaacgcagggttttatagtcgtgctgattgtgaattctttacgaaatctggtcttaattgggattt |
402549 |
T |
|
| Q |
307 |
gaaacttgtgaatgaatcgtatgaatgggttgaacgtgaaatcgtgtttcgtcctgatttgaagacgtggcaatctgctgttcgtgatggtcttcttgaa |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
402550 |
gaaacttgtgaatgaatcgtatgaatgggttgaacgtgaaatcgtgtttcgtcctgatttgaaaacgtggcaatccgctgttcgtgatggtcttcttgaa |
402649 |
T |
|
| Q |
407 |
gctggtgttgttccctataacggtttcaccttagatcatgccagtggtaccaaaatcggtggatcctccttcgattcccaaggtaaaca |
495 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
402650 |
gctggtgttggtccttataacggtttcaccttagatcatgctactggtaccaaaatcggtggatccaccttcgattcccaaggtaaaca |
402738 |
T |
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