View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_low_22 (Length: 255)

Name: NF10349_low_22
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_low_22
NF10349_low_22
[»] chr5 (3 HSPs)
chr5 (9-111)||(42329791-42329890)
chr5 (165-239)||(42329712-42329785)
chr5 (205-239)||(17674160-17674194)
[»] chr7 (2 HSPs)
chr7 (201-239)||(12977852-12977890)
chr7 (202-239)||(35778454-35778491)
[»] chr8 (1 HSPs)
chr8 (206-239)||(11165480-11165513)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 111
Target Start/End: Complemental strand, 42329890 - 42329791
Alignment:
Q  9 agcatagggctggttataattttagaaaaccatattattggaaatgttaatcatgataattgataggaaagactcctccaatctattccataggataatc 108  Q
    |||||| ||||| |||||||||||||||||||||||||||||||||||||||   || ||||||||||||||||||||||| ||||||||||||||||||    
T  42329890 agcataaggctgattataattttagaaaaccatattattggaaatgttaatc---atcattgataggaaagactcctccaacctattccataggataatc 42329794  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Complemental strand, 42329785 - 42329712
Alignment:
Q  165 acttaattattttaaccatctgatagtgttggctctaatttaatactccctcctttttaaaatgagtgtcacttt 239  Q
    |||||| |||||||||||   |||||||||||||||||||||||||||  |  ||||||||||||||||||||||    
T  42329785 acttaagtattttaaccaatggatagtgttggctctaatttaatactctat-ttttttaaaatgagtgtcacttt 42329712  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 239
Target Start/End: Original strand, 17674160 - 17674194
Alignment:
Q  205 taatactccctcctttttaaaatgagtgtcacttt 239  Q
    ||||||||||||| |||||||||||||||||||||    
T  17674160 taatactccctccgttttaaaatgagtgtcacttt 17674194  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 239
Target Start/End: Complemental strand, 12977890 - 12977852
Alignment:
Q  201 aatttaatactccctcctttttaaaatgagtgtcacttt 239  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  12977890 aatttactactccctcctttttaaaatgagtgtcgcttt 12977852  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 239
Target Start/End: Original strand, 35778454 - 35778491
Alignment:
Q  202 atttaatactccctcctttttaaaatgagtgtcacttt 239  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  35778454 atttactactccctccattttaaaatgagtgtcacttt 35778491  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 206 - 239
Target Start/End: Original strand, 11165480 - 11165513
Alignment:
Q  206 aatactccctcctttttaaaatgagtgtcacttt 239  Q
    |||||||||||| |||||||||||||||||||||    
T  11165480 aatactccctccgttttaaaatgagtgtcacttt 11165513  T

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