View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_25 (Length: 251)
Name: NF10349_low_25
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 42780632 - 42780390
Alignment:
| Q |
1 |
ttgttcaccaaatccattagcatgagcagaacacaaaacgatgtttgagttgagcaacaaccatgctaaggttgctactagaataatcatgttgtgcctg |
100 |
Q |
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| T |
42780632 |
ttgttcaccaaatccattagcatgagcagaacacaaaacgatgtttgagttgagtaacaaccatgctaaggttgctactagaataatcatgttgtgcctg |
42780533 |
T |
|
| Q |
101 |
tgccttatgctctcttgtttcatttcgttgaactcaagagaggttggtttggttgggatcgaattaatatgtgagttaaaagatgcctataattatgtag |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42780532 |
tgccttatgctctcttgtttcatttcgttgaactcaagagaggttagtttggctgggatcgaattaatatgtgagttaaaagatgcctataattatatag |
42780433 |
T |
|
| Q |
201 |
tatattccacttcgactt---tcttactatgattgtttctgtg |
240 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |
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| T |
42780432 |
tatattccacttcgactttcttcttactatgattgtttctgtg |
42780390 |
T |
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