View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_28 (Length: 243)
Name: NF10349_low_28
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 43560456 - 43560231
Alignment:
| Q |
18 |
tcaacatatatcattttgtgcatgtttggaatcacgatgagtttgactaaattatcacagtcctgtaatatagctttaacaaaaattacaaggactccct |
117 |
Q |
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| T |
43560456 |
tcaacatatatcattttgtgcatgtttggaatcaccatgagtttgactaaattatcatagtcctgtaatatagctttaacaaaaattacgaggactccct |
43560357 |
T |
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| Q |
118 |
gtgattttgtcaaattcactgtgaatccaaacatatttcttccgttacgaaatgaatttcnnnnnnngaacattacaggtgggctcaaatagcagcacaa |
217 |
Q |
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| T |
43560356 |
gtgattttgtcaaattcactgtgaatccaaacatatttcttctgttacgaaatgaatttctttttttgaacattacaggtgggctcaaatagcagcacaa |
43560257 |
T |
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| Q |
218 |
ttaccagggagaacagataatgaaat |
243 |
Q |
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| T |
43560256 |
ttaccagggagaacagataatgaaat |
43560231 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 51044664 - 51044711
Alignment:
| Q |
193 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatga |
240 |
Q |
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| T |
51044664 |
caggtgggctcaaattgcatcacaattaccagggagaacagataatga |
51044711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 240
Target Start/End: Complemental strand, 34626516 - 34626469
Alignment:
| Q |
193 |
caggtgggctcaaatagcagcacaattaccagggagaacagataatga |
240 |
Q |
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| T |
34626516 |
caggtgggctcaaattgcagcacaattaccaggtagaacggataatga |
34626469 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 206 - 240
Target Start/End: Original strand, 34358271 - 34358305
Alignment:
| Q |
206 |
atagcagcacaattaccagggagaacagataatga |
240 |
Q |
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| T |
34358271 |
atagcagcacaattaccaggaagaacagataatga |
34358305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 32297706 - 32297735
Alignment:
| Q |
35 |
gtgcatgtttggaatcacgatgagtttgac |
64 |
Q |
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| T |
32297706 |
gtgcatgtttggaatcacgatgagtttgac |
32297735 |
T |
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