View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10349_low_30 (Length: 240)
Name: NF10349_low_30
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_30 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 36423089 - 36423311
Alignment:
| Q |
18 |
cttctggataccctacaatgacacttgaggaaatggttgctgtactcaatgttccattgaagagtggcgagtttaacagcacgattagaaaacgcggtgt |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36423089 |
cttctggataccctacaatgacacttgaggaaatggttgctgtactcgatgttccattgaagagtggcgagtttaacagcacgattagaaaacgcggtgt |
36423188 |
T |
|
| Q |
118 |
gaatttagcagaccttgcatgccttccagtcgcttcagggtggtatggaacaccagttgaagagagtagaagattgattaaggtgcagtgttattcaagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36423189 |
gaatttagcagaccttgcatgccttccagtcgcttcagggtggtatggaacaccggttgaagagaatagaagattgattaaggtgcagtgttattcaagc |
36423288 |
T |
|
| Q |
218 |
aaaggcactgtcaatttctacat |
240 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
36423289 |
aaaggcactgtcaatttctacat |
36423311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University