View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_low_32 (Length: 232)

Name: NF10349_low_32
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_low_32
NF10349_low_32
[»] chr8 (7 HSPs)
chr8 (1-173)||(15348435-15348607)
chr8 (45-156)||(12199897-12200008)
chr8 (45-156)||(12444325-12444436)
chr8 (29-120)||(4032277-4032368)
chr8 (41-131)||(12194916-12195006)
chr8 (41-131)||(12439344-12439434)
chr8 (180-232)||(15272041-15272096)
[»] chr4 (36 HSPs)
chr4 (3-159)||(7770991-7771147)
chr4 (5-155)||(48170923-48171076)
chr4 (5-159)||(48735649-48735806)
chr4 (5-130)||(48862857-48862985)
chr4 (30-159)||(45372419-45372548)
chr4 (9-158)||(48870130-48870279)
chr4 (9-158)||(48885816-48885965)
chr4 (3-131)||(7789704-7789832)
chr4 (5-127)||(33134160-33134285)
chr4 (5-121)||(7904657-7904773)
chr4 (3-130)||(45366553-45366683)
chr4 (13-131)||(48891024-48891143)
chr4 (27-129)||(48156786-48156888)
chr4 (5-131)||(7822584-7822710)
chr4 (8-156)||(48148022-48148173)
chr4 (9-131)||(7238061-7238183)
chr4 (5-122)||(7877344-7877461)
chr4 (1-121)||(49041471-49041591)
chr4 (5-131)||(7800252-7800378)
chr4 (3-144)||(50668645-50668786)
chr4 (5-124)||(7774166-7774285)
chr4 (9-131)||(7813095-7813217)
chr4 (5-130)||(33133653-33133781)
chr4 (3-131)||(7765236-7765364)
chr4 (29-131)||(7907940-7908042)
chr4 (39-131)||(7786058-7786150)
chr4 (5-121)||(37827331-37827447)
chr4 (5-145)||(48875447-48875587)
chr4 (11-130)||(45385131-45385249)
chr4 (5-87)||(48852316-48852401)
chr4 (61-129)||(48902567-48902635)
chr4 (28-115)||(49044589-49044676)
chr4 (35-126)||(48898342-48898436)
chr4 (29-143)||(50251169-50251283)
chr4 (8-128)||(47207552-47207672)
chr4 (65-115)||(49048996-49049046)
[»] chr5 (6 HSPs)
chr5 (5-128)||(29712806-29712929)
chr5 (15-130)||(29695768-29695883)
chr5 (5-128)||(29687669-29687792)
chr5 (65-128)||(42562728-42562791)
chr5 (30-131)||(1812040-1812141)
chr5 (66-115)||(178650-178699)
[»] chr1 (5 HSPs)
chr1 (5-127)||(24309796-24309918)
chr1 (5-130)||(24340030-24340155)
chr1 (5-122)||(24322086-24322203)
chr1 (16-131)||(24366770-24366885)
chr1 (5-127)||(24415456-24415577)
[»] scaffold0508 (1 HSPs)
scaffold0508 (9-130)||(11878-11999)
[»] chr3 (5 HSPs)
chr3 (5-131)||(11024874-11025000)
chr3 (5-131)||(11015862-11015988)
chr3 (5-131)||(47452247-47452370)
chr3 (38-131)||(11006332-11006425)
chr3 (62-98)||(955615-955651)
[»] chr6 (3 HSPs)
chr6 (13-107)||(21979989-21980083)
chr6 (23-131)||(21015391-21015499)
chr6 (62-122)||(14193139-14193199)
[»] chr7 (1 HSPs)
chr7 (24-155)||(48883373-48883505)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 15348607 - 15348435
Alignment:
Q  1 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15348607 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 15348508  T
Q  101 gaaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgagataggtaaggtagt 173  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  15348507 gaaacgtataagagacttcaccggtaacctctctagaatttgaactattaattcatgagacaggtaaggtagt 15348435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 12200008 - 12199897
Alignment:
Q  45 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 144  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12200008 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12199909  T
Q  145 ctattaattcat 156  Q
      ||||||||||    
T  12199908 tgattaattcat 12199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 45 - 156
Target Start/End: Complemental strand, 12444436 - 12444325
Alignment:
Q  45 gaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctctctagaatttgaa 144  Q
    |||||||| |||| |||||||||||||||||||||||| ||||||||||| |||||||||| || |||||| |||||||| ||||||   || |||||||    
T  12444436 gaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 12444337  T
Q  145 ctattaattcat 156  Q
      ||||||||||    
T  12444336 tgattaattcat 12444325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 120
Target Start/End: Original strand, 4032277 - 4032368
Alignment:
Q  29 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttca 120  Q
    ||||||||||||||| |||||||| |||| ||||||||| |||||||  |||||||| |||||||| || ||||||||||||||||| ||||    
T  4032277 ggtaatttgaaaatgcgaatttgcaaagtgaggatcagatataagagttaaccaagatttacaaacacacttgaaacgtataagagacttca 4032368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 12195006 - 12194916
Alignment:
Q  41 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 131  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12195006 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12194916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 131
Target Start/End: Complemental strand, 12439434 - 12439344
Alignment:
Q  41 atgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 131  Q
    |||||||||||| ||||  ||||||||||||||||| ||||| |||||||||| ||||||||||| || |||||| |||||||| ||||||    
T  12439434 atgtgaatttgcaaagtgtggatcagagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 12439344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 15272096 - 15272041
Alignment:
Q  180 tttttcttctcagtgcgcttactccctctgcgac---ggtttcttttcttcatttc 232  Q
    ||||||||||| ||||||||||||||||||||||   |||||||||||||||||||    
T  15272096 tttttcttctctgtgcgcttactccctctgcgactttggtttcttttcttcatttc 15272041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 1e-40; HSPs: 36)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 3 - 159
Target Start/End: Complemental strand, 7771147 - 7770991
Alignment:
Q  3 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 102  Q
    |||| ||||| |||||||||||| | || || |||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7771147 aaaaatctacaagtgtgtgttgcagaggcaagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaacgcatttga 7771048  T
Q  103 aacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 159  Q
    ||| ||||||||| |||||||| ||||||   |||||||| | ||||| ||||||||    
T  7771047 aacatataagagacttcaccggcaacctcatcagaatttggattattagttcatgag 7770991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 155
Target Start/End: Original strand, 48170923 - 48171076
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 101  Q
    |||| ||||||||||||||  |||||||||||||||||| |||||||| |||| |||||||   |||||||||| |||||||||||||||||| ||||||    
T  48170923 aattttacgagtgtgtgtttaggcggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacacatttg 48171022  T
Q  102 aaacgtataagagatttcaccggtaacctctctagaatttgaactattaattca 155  Q
    ||||||| |||||| ||||||| |||||||   |||||||||||||| ||||||    
T  48171023 aaacgtagaagagacttcaccgataacctcagcagaatttgaactatcaattca 48171076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 159
Target Start/End: Original strand, 48735649 - 48735806
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 101  Q
    ||||||||||||||| |||  ||||||||||| ||||||||||||||| || | || ||||   ||||||||||||||||||||||||||||| ||||||    
T  48735649 aattctacgagtgtgggttatggcggtaatttcaaaatgtgaatttgcaaaatcagtatcacaggagataagagaaaaccaagacttacaaacacatttg 48735748  T
Q  102 aaacgtataagagatttcaccggtaacctctctagaatttgaactattaattcatgag 159  Q
    ||||| |||||||| |||||||||||||||   |||||||||||||| || |||||||    
T  48735749 aaacgaataagagacttcaccggtaacctcagaagaatttgaactatcaactcatgag 48735806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 48862985 - 48862857
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 101  Q
    ||||||| | |||||||||||||| |||| |||||||||||||||||| |||| |||||||   ||||||||||||||||||||||| ||||||||||||    
T  48862985 aattctatgggtgtgtgttgcggcagtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagacttgcaaacgcatttg 48862886  T
Q  102 aaacgtataagagatttcaccggtaacct 130  Q
    ||||| |||||||| ||||||||||||||    
T  48862885 aaacgaataagagacttcaccggtaacct 48862857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 159
Target Start/End: Original strand, 45372419 - 45372548
Alignment:
Q  30 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 129  Q
    ||||||||||||||||||||||| || | |||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  130 tctctagaatttgaactattaattcatgag 159  Q
    |   |||||||||||  || ||||||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgag 45372548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 48870279 - 48870130
Alignment:
Q  9 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 108  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |    
T  48870279 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48870180  T
Q  109 taagagatttcaccggtaacctctctagaatttgaactattaattcatga 158  Q
    ||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48870179 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48870130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 48885965 - 48885816
Alignment:
Q  9 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 108  Q
    |||||||||||||||||||| || |  ||||||||||||||||| ||    ||||| ||||||||| ||||||||||||||||||||||||||||||| |    
T  48885965 ctacgagtgtgtgttgcggctgtgagatgaaaatgtgaatttgcaaaaaggggatcggagataagaaaaaaccaagacttacaaacgcatttgaaacgaa 48885866  T
Q  109 taagagatttcaccggtaacctctctagaatttgaactattaattcatga 158  Q
    ||||||| |||||||||| ||||   |||||||||||||| |||||||||    
T  48885865 taagagaattcaccggtagcctcagcagaatttgaactatcaattcatga 48885816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 7789832 - 7789704
Alignment:
Q  3 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 102  Q
    |||| ||||| |||||||||||||| || || |||||||||||||||| | |||| |||||| ||||||| |||||||||||||||||||||||||||||    
T  7789832 aaaaatctacaagtgtgtgttgcggaggcaagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttga 7789733  T
Q  103 aacgtataagagatttcaccggtaacctc 131  Q
    ||| ||||||||| |||||||| ||||||    
T  7789732 aacatataagagacttcaccggcaacctc 7789704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 127
Target Start/End: Original strand, 33134160 - 33134285
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 101  Q
    |||| ||| ||||||||||| |||||| |||||||||||||||||||| |||| |||||||   |||||||||||||| |||| ||||||||||||||||    
T  33134160 aattttactagtgtgtgttgaggcggttatttgaaaatgtgaatttgcaaagtgaggatcattagagataagagaaaatcaaggcttacaaacgcatttg 33134259  T
Q  102 aaacgtataagagatttcaccggtaa 127  Q
    ||||| |||||||| |||||||||||    
T  33134260 aaacgaataagagacttcaccggtaa 33134285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 5 - 121
Target Start/End: Complemental strand, 7904773 - 7904657
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| ||||||  | ||||||||| | |||||||||||||||||| |||| ||||||||||||||||||||||||  |||||||||| |||||||||    
T  7904773 aattctaggagtgttagctgcggcggtgagttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaa 7904674  T
Q  105 cgtataagagatttcac 121  Q
    ||||||||||| |||||    
T  7904673 cgtataagagacttcac 7904657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 3 - 130
Target Start/End: Original strand, 45366553 - 45366683
Alignment:
Q  3 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatt 99  Q
    |||| ||||||||||||| ||||||||| || |||||||||||||||||| ||||  | |||   ||||||||||||||||||| ||||||||||||| |    
T  45366553 aaaactctacgagtgtgttttgcggcggaaagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcact 45366652  T
Q  100 tgaaacgtataagagatttcaccggtaacct 130  Q
    |||||||||||||||| ||||| ||||||||    
T  45366653 tgaaacgtataagagacttcactggtaacct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 131
Target Start/End: Complemental strand, 48891143 - 48891024
Alignment:
Q  13 gagtgtgtgttgcgg-cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataa 111  Q
    |||||||||||| || |||||| ||||||||| |||||||| || | |||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  48891143 gagtgtgtgttgggggcggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaacgcatttgaaacgtataa 48891044  T
Q  112 gagatttcaccggtaacctc 131  Q
    |||| || |||| |||||||    
T  48891043 gagactttaccgataacctc 48891024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 27 - 129
Target Start/End: Original strand, 48156786 - 48156888
Alignment:
Q  27 gcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 126  Q
    ||||||||||||||||| |||||||| || | || ||| |||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||    
T  48156786 gcggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggta 48156885  T
Q  127 acc 129  Q
    |||    
T  48156886 acc 48156888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 7822710 - 7822584
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| ||||  ||||||||||||||||||||||| || |||||||| || ||||||    
T  7822710 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaa 7822611  T
Q  105 cgtataagagatttcaccggtaacctc 131  Q
    ||||||||| | |||||||| ||||||    
T  7822610 cgtataagatacttcaccggcaacctc 7822584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 8 - 156
Target Start/End: Original strand, 48148022 - 48148173
Alignment:
Q  8 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||| |||||||| |||  ||||| | || |||||||||||||||||||| |||||||   |||||||||||||||||||||||||| || |||||||||    
T  48148022 tctatgagtgtgttttgaagcggtgagttcaaaatgtgaatttgcgaagtgaggatcatgagagataagagaaaaccaagacttacagacacatttgaaa 48148121  T
Q  105 cgtataagagatttcaccggtaacctctctagaatttgaactattaattcat 156  Q
    || |||||||| ||||| ||||||||    || ||||||||||| |||||||    
T  48148122 cgaataagagacttcactggtaaccttgaaaggatttgaactatcaattcat 48148173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 7238061 - 7238183
Alignment:
Q  9 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 108  Q
    |||||||| || ||||| | ||||  ||| |||||||||||||| |||| ||| |||||||||||||||||||||||||||||||| ||||||||||  |    
T  7238061 ctacgagtatgcgttgcagaggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacaga 7238160  T
Q  109 taagagatttcaccggtaacctc 131  Q
    ||||||| ||||| || ||||||    
T  7238161 taagagacttcactggcaacctc 7238183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 7877461 - 7877344
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   |||||||| ||||||||||    
T  7877461 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaaccatagcttacaaatgcatttgaaa 7877362  T
Q  105 cgtataagagatttcacc 122  Q
    ||||||||||| ||||||    
T  7877361 cgtataagagacttcacc 7877344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 121
Target Start/End: Original strand, 49041471 - 49041591
Alignment:
Q  1 acaaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcattt 100  Q
    |||||||||||||  |||| |||| || ||||| || |||||| |||||||| || |  ||||||||||||||||||||||||||||| |||||||||||    
T  49041471 acaaaattctacggttgtgggttgggggggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagacttgcaaacgcattt 49041570  T
Q  101 gaaacgtataagagatttcac 121  Q
    |||||  |||||||| |||||    
T  49041571 gaaacaaataagagacttcac 49041591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 7800378 - 7800252
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||||||| |||||||| | ||| | |||||| ||||||||||| |||   |||||||||| |||||||||||| || |||||||| || ||||||    
T  7800378 aattctacgagtatgtgttgcagtggtgaattgaaattgtgaatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaa 7800279  T
Q  105 cgtataagagatttcaccggtaacctc 131  Q
    ||||||||| | |||||||| ||||||    
T  7800278 cgtataagatacttcaccggcaacctc 7800252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 3 - 144
Target Start/End: Complemental strand, 50668786 - 50668645
Alignment:
Q  3 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 102  Q
    ||||||||||||||||||| | |||| |||| || |||||| ||||| || || |   |||| ||||| |||||||||||||| ||||||||||| ||||    
T  50668786 aaaattctacgagtgtgtgattcggcagtaagttcaaaatgagaattagcaaaattgtgatcggagatgagagaaaaccaagatttacaaacgcacttga 50668687  T
Q  103 aacgtataagagatttcaccggtaacctctctagaatttgaa 144  Q
    ||||||||||| ||||||| || |||||| | | ||||||||    
T  50668686 aacgtataagatatttcacgggcaacctcaccaaaatttgaa 50668645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 124
Target Start/End: Original strand, 7774166 - 7774285
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| ||||||| |||| || ||| | |||||||||||||||||| || |  |||||||||||||||||||||||   ||||||||| |||||||||    
T  7774166 aattctaggagtgtgcgttgtggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaa 7774265  T
Q  105 cgtataagagatttcaccgg 124  Q
     | |||||||| ||||||||    
T  7774266 tgaataagagacttcaccgg 7774285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 131
Target Start/End: Complemental strand, 7813217 - 7813095
Alignment:
Q  9 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 108  Q
    |||||||| |||||||| | ||| | |||||| ||||| ||||| ||||  || |||||||||||||||||||| || |||||||| || ||||||||||    
T  7813217 ctacgagtatgtgttgcagtggtgaattgaaattgtgactttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgta 7813118  T
Q  109 taagagatttcaccggtaacctc 131  Q
    ||||| | |||||||| ||||||    
T  7813117 taagatacttcaccggcaacctc 7813095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 33133781 - 33133653
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatca---gagataagagaaaaccaagacttacaaacgcatttg 101  Q
    |||| ||| ||||||||||| |||||| ||||||||||| |||||||| |||| | |||||   ||||||||||||||||||  |||||||| | |||||    
T  33133781 aattttactagtgtgtgttgaggcggttatttgaaaatgcgaatttgcaaagtgaagatcattagagataagagaaaaccaaagcttacaaatgaatttg 33133682  T
Q  102 aaacgtataagagatttcaccggtaacct 130  Q
    ||||| |||||||| ||||  ||||||||    
T  33133681 aaacgaataagagacttcattggtaacct 33133653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 131
Target Start/End: Complemental strand, 7765364 - 7765236
Alignment:
Q  3 aaaattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttga 102  Q
    |||| ||||||||||||| ||||   | ||| ||| |||||||||||||| |||| |||||||||||||| |||||||||  ||||||||| ||| ||||    
T  7765364 aaaaatctacgagtgtgttttgcatggttaagttggaaatgtgaatttgcaaagtgaggatcagagataatagaaaaccataacttacaaatgcacttga 7765265  T
Q  103 aacgtataagagatttcaccggtaacctc 131  Q
    ||  ||  ||||| |||||||||||||||    
T  7765264 aaactaagagagacttcaccggtaacctc 7765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 29 - 131
Target Start/End: Complemental strand, 7908042 - 7907940
Alignment:
Q  29 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 128  Q
    ||||| |||||||||||||||||| || |  ||| ||||||||||||||||||| ||||||| |||  | ||||||||| ||||||| |||||||| |||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  129 ctc 131  Q
    |||    
T  7907942 ctc 7907940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 39 - 131
Target Start/End: Complemental strand, 7786150 - 7786058
Alignment:
Q  39 aaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 131  Q
    |||||||||||||| || | |||||||||||||| ||||| |||   ||||||||||||||||||   |||||||||||||||||| ||||||    
T  7786150 aaatgtgaatttgcaaattgaggatcagagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctc 7786058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 121
Target Start/End: Original strand, 37827331 - 37827447
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||| |||||| |||| || ||| |||| |||||||||||||||||| ||||  |||| ||| |||||||  ||||| ||||||||||||||| | |||    
T  37827331 aattcgacgagtttgtgctgtggccgtaagttgaaaatgtgaatttgcaaagtcgggattagatataagagttaaccatgacttacaaacgcatgtaaaa 37827430  T
Q  105 cgtataagagatttcac 121  Q
    | ||||||||| |||||    
T  37827431 cttataagagacttcac 37827447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 145
Target Start/End: Complemental strand, 48875587 - 48875447
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||||||   ||||||| ||||| | |||||||||||||||||  || |  || || ||||| ||||||||||||||||| |||||||||||||||    
T  48875587 aattctacgagacggtgttgccgcggtgagttgaaaatgtgaatttgtaaaatggggttcggagatgagagaaaaccaagacttgcaaacgcatttgaaa 48875488  T
Q  105 cgtataagagatttcaccggtaacctctctagaatttgaac 145  Q
    || || ||||| || || | |||||||   |||||||||||    
T  48875487 cgaattagagacttgactgataacctcagcagaatttgaac 48875447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 11 - 130
Target Start/End: Original strand, 45385131 - 45385249
Alignment:
Q  11 acgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtata 110  Q
    ||||| |||||||| ||||| || |||||| ||||||| ||| ||||  | ||| ||||  |||||||||||||||||||||||| |||||||||||||     
T  45385131 acgagggtgtgttgtggcggaaagttgaaa-tgtgaatatgcaaagtgggtatcggagacgagagaaaaccaagacttacaaacggatttgaaacgtatg 45385229  T
Q  111 agagatttcaccggtaacct 130  Q
    ||||| || || ||||||||    
T  45385230 agagacttaactggtaacct 45385249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 87
Target Start/End: Complemental strand, 48852401 - 48852316
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaagga---tcagagataagagaaaaccaagact 87  Q
    |||||||||||||||||||| ||| ||||||| |||||| |||||||| |||| ||||   | |||||||||||||||||||||||    
T  48852401 aattctacgagtgtgtgttgaggcagtaatttcaaaatgcgaatttgcaaagtgaggattgtgagagataagagaaaaccaagact 48852316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Complemental strand, 48902635 - 48902567
Alignment:
Q  61 gatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 129  Q
    ||||||| |||||||||||||||||||||||||| ||||||||||| || ||||| || ||||| ||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaacc 48902567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 49044589 - 49044676
Alignment:
Q  28 cggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 115  Q
    ||||||||| ||||||||||||||| ||||  |  | ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49044589 cggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49044676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 35 - 126
Target Start/End: Complemental strand, 48898436 - 48898342
Alignment:
Q  35 ttgaaaatgtgaatttgcgaagtaaggatc---agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggta 126  Q
    |||||||||||||||||| ||||  | |||   ||||||||| || ||||||||||||||||| || ||||||||| ||||||| ||||| ||||    
T  48898436 ttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggta 48898342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 50251169 - 50251283
Alignment:
Q  29 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 128  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||||||||  ||||| || |||    
T  50251169 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactttaattgtataagagccttcactggcaac 50251268  T
Q  129 ctctctagaatttga 143  Q
    ||  ||| |||||||    
T  50251269 ctaactaaaatttga 50251283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 128
Target Start/End: Complemental strand, 47207672 - 47207552
Alignment:
Q  8 tctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 107  Q
    |||| |||||||||||  || ||||| || |||||||||||| |  || |  || || ||||| |||||||| |||||||| ||||| |  || ||||||    
T  47207672 tctatgagtgtgtgttttggtggtaagttcaaaatgtgaattagaaaaatgtgggtcggagatgagagaaaatcaagacttccaaacactcttaaaacgt 47207573  T
Q  108 ataagagatttcaccggtaac 128  Q
    |||||||| ||||||||||||    
T  47207572 ataagagacttcaccggtaac 47207552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 115
Target Start/End: Original strand, 49048996 - 49049046
Alignment:
Q  65 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 115  Q
    ||||||||||||||||||  |||||||||| || |||||||||| ||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagaga 49049046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 29712806 - 29712929
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| ||| |||||||  |||||||| ||||||||||||||||||||| | ||  | ||||||||||||||||||  ||||||||||||| ||||||    
T  29712806 aattctaggagcgtgtgttttggcggtaagttgaaaatgtgaatttgcgaaatcagattgagagataagagaaaaccataacttacaaacgcacttgaaa 29712905  T
Q  105 cgtataagagatttcaccggtaac 128  Q
    || |||||||| ||||||||||||    
T  29712906 cgaataagagacttcaccggtaac 29712929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 130
Target Start/End: Complemental strand, 29695883 - 29695768
Alignment:
Q  15 gtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagag 114  Q
    |||||||| |||| ||||| |||||||||||||||||| |||| ||| | ||| |||||||| |||||  |||||||||||||||||||||| |||||||    
T  29695883 gtgtgtgtagcggtggtaagttgaaaatgtgaatttgcaaagtgaggttgagatataagagataaccataacttacaaacgcatttgaaacgaataagag 29695784  T
Q  115 atttcaccggtaacct 130  Q
    | || || ||||||||    
T  29695783 acttgactggtaacct 29695768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 29687792 - 29687669
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| |||||||||    |||||||| ||||||||| |||||||| |||| ||| | ||| || ||||||||||||||||||||||| || |||||     
T  29687792 aattctaggagtgtgtgcattggcggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaag 29687693  T
Q  105 cgtataagagatttcaccggtaac 128  Q
    ||||||||||| ||||| ||||||    
T  29687692 cgtataagagacttcactggtaac 29687669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 42562728 - 42562791
Alignment:
Q  65 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaac 128  Q
    |||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtaac 42562791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 1812141 - 1812040
Alignment:
Q  30 gtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacc 129  Q
    |||| |||||||||  ||||||| ||||  ||||  |||||||||||||||||  |||||||||| |||||| ||||||| ||| | ||||| |||||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  130 tc 131  Q
    ||    
T  1812041 tc 1812040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 178699 - 178650
Alignment:
Q  66 gagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 115  Q
    ||||| ||||| ||||||||||||||||| ||||||||||| ||||||||    
T  178699 gagatgagagataaccaagacttacaaacacatttgaaacgaataagaga 178650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 24309918 - 24309796
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||||| ||||||||||  |  |||| |||||||||||||||||| |||| || |||||||||||||||||||||  ||||||||||| ||||||||    
T  24309918 aattctacgggtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaaccataacttacaaacggatttgaaa 24309819  T
Q  105 cgtataagagatttcaccggtaa 127  Q
    || |||||||| || ||||||||    
T  24309818 cgaataagagacttaaccggtaa 24309796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 5 - 130
Target Start/End: Complemental strand, 24340155 - 24340030
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||||| ||||||||||||| || |||| |||||| ||||||||||| |||| |  |||||||||||| |||||||| |||||||||||  ||||||||    
T  24340155 aattctaagagtgtgtgttgcagcagtaacttgaaagtgtgaatttgcaaagtgattatcagagataagtgaaaaccatgacttacaaacagatttgaaa 24340056  T
Q  105 cgtataagagatttcaccggtaacct 130  Q
    || |||||||| || |||||||||||    
T  24340055 cgaataagagacttaaccggtaacct 24340030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 24322203 - 24322086
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||| ||||||||||||||| || ||| |  |||| ||||||||||| ||   |||||  |||||||||||||||||||||||||||||||||||||||    
T  24322203 aattcgacgagtgtgtgttgcagcagtattcagaaactgtgaatttgcaaaacgaggatttgagataagagaaaaccaagacttacaaacgcatttgaaa 24322104  T
Q  105 cgtataagagatttcacc 122  Q
    || |||||||| ||||||    
T  24322103 cgaataagagacttcacc 24322086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 16 - 131
Target Start/End: Complemental strand, 24366885 - 24366770
Alignment:
Q  16 tgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagaga 115  Q
    |||||||||| || ||||| ||||| ||||||||||| ||||||||||  ||||||||||||||||| ||||| ||||| ||||||||||| || ||||     
T  24366885 tgtgtgttgcagcagtaatctgaaactgtgaatttgcaaagtaaggatttgagataagagaaaaccatgacttgcaaacacatttgaaacgaatcagagt 24366786  T
Q  116 tttcaccggtaacctc 131  Q
    ||  || |||||||||    
T  24366785 ttcaactggtaacctc 24366770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 24415577 - 24415456
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    ||||| ||||||||||||||| || ||||| ||||| ||||||||||| ||    ||||  || |||||||||||||||||||||| |||||||||||||    
T  24415577 aattcgacgagtgtgtgttgcagcagtaatctgaaactgtgaatttgcaaaact-ggatttgaaataagagaaaaccaagacttacgaacgcatttgaaa 24415479  T
Q  105 cgtataagagatttcaccggtaa 127  Q
    || |||||||| || ||||||||    
T  24415478 cgaataagagacttaaccggtaa 24415456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 11999 - 11878
Alignment:
Q  9 ctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgta 108  Q
    ||||||||||||||||  |  |||| |||||||||||||||||| |||| |  ||||||||||||||||||||| |||||||||||| |||||||||| |    
T  11999 ctacgagtgtgtgttgaagaagtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaacggatttgaaacgga 11900  T
Q  109 taagagatttcaccggtaacct 130  Q
    ||||||| || | |||||||||    
T  11899 taagagacttaatcggtaacct 11878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 4e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 11024874 - 11025000
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||||| |||||||||||||||||||||    
T  11024874 aattctattagtgtgtgttgcaggggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaaccatgacttacaaacgcatttgaaa 11024973  T
Q  105 cgtataagagatttcaccggtaacctc 131  Q
    ||||| ||||| |||||||||||||||    
T  11024974 cgtatgagagacttcaccggtaacctc 11025000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 11015862 - 11015988
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||  |||||||||||| | || || || |||||| || ||||| |||| | |||||||||||||||  ||| | |||||||||||||||||||||    
T  11015862 aattctattagtgtgtgttgcagtggaaagttcaaaatgcgattttgcaaagttatgatcagagataagagctaacaatgacttacaaacgcatttgaaa 11015961  T
Q  105 cgtataagagatttcaccggtaacctc 131  Q
    ||||| ||||| |||||||||||||||    
T  11015962 cgtatgagagacttcaccggtaacctc 11015988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 47452247 - 47452370
Alignment:
Q  5 aattctacgagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaa 104  Q
    |||||||||||||||||   ||||||||| || ||||||||  ||||| |||  |||||||||||||||||||||||| |||||| ||| ||| |||||     
T  47452247 aattctacgagtgtgtg---cggcggtaagttcaaaatgtgtttttgcaaagagaggatcagagataagagaaaaccatgacttagaaatgcacttgaag 47452343  T
Q  105 cgtataagagatttcaccggtaacctc 131  Q
    |||| |||||| |||||||| ||||||    
T  47452344 cgtacaagagacttcaccggcaacctc 47452370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 38 - 131
Target Start/End: Original strand, 11006332 - 11006425
Alignment:
Q  38 aaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcaccggtaacctc 131  Q
    |||||| || ||||| |||| |||||||||||||||||  ||||| ||||||||||| || |||||||||||||| || |||||||| ||||||    
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctc 11006425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 955651 - 955615
Alignment:
Q  62 atcagagataagagaaaaccaagacttacaaacgcat 98  Q
    ||||||||||||||||  |||||||||||||||||||    
T  955651 atcagagataagagaattccaagacttacaaacgcat 955615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 21979989 - 21980083
Alignment:
Q  13 gagtgtgtgttgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgt 107  Q
    |||||||||||||||||| ||  | |||||||||||| || ||||  |||| |||||| ||||||||||||||||||||||| || |||||||||    
T  21979989 gagtgtgtgttgcggcggcaagatcaaaatgtgaattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacacttgaaacgt 21980083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 21015499 - 21015391
Alignment:
Q  23 tgcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 122  Q
    |||||| ||||||| |||||||||| |||| ||||  |  | |||||||||||||||| |  |||||||||| || |||||||||| ||||||  | |||    
T  21015499 tgcggcagtaatttcaaaatgtgaaattgcaaagtgggtttgagagataagagaaaacaataacttacaaacacacttgaaacgtagaagagacatgacc 21015400  T
Q  123 ggtaacctc 131  Q
    |||||||||    
T  21015399 ggtaacctc 21015391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 122
Target Start/End: Original strand, 14193139 - 14193199
Alignment:
Q  62 atcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagatttcacc 122  Q
    |||| |||||||||||| |||| |||||||||| |||||||||| ||  ||||| ||||||    
T  14193139 atcaaagataagagaaagccaaaacttacaaacacatttgaaacctaagagagacttcacc 14193199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 155
Target Start/End: Complemental strand, 48883505 - 48883373
Alignment:
Q  24 gcggcggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgca---tttgaaacgtataagagatttca 120  Q
    ||||| |||| ||||||||| || ||||||||||  | || |||||  ||||||||||||| ||||||||| ||   ||||||||||| |||||| ||||    
T  48883505 gcggctgtaagttgaaaatgggattttgcgaagttggtatgagaga--agagaaaaccaaggcttacaaacacattttttgaaacgtaaaagagacttca 48883408  T
Q  121 ccggtaacctctctagaatttgaactattaattca 155  Q
    |  |||||||| | | ||||||||  |||||||||    
T  48883407 catgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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