View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10349_low_33 (Length: 230)

Name: NF10349_low_33
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10349_low_33
NF10349_low_33
[»] chr3 (33 HSPs)
chr3 (20-230)||(19249201-19249407)
chr3 (126-230)||(12388763-12388867)
chr3 (31-115)||(20725369-20725452)
chr3 (1-116)||(16199582-16199695)
chr3 (20-118)||(6091005-6091103)
chr3 (30-96)||(26417489-26417555)
chr3 (17-88)||(12968643-12968713)
chr3 (21-120)||(14392795-14392894)
chr3 (21-120)||(22803890-22803988)
chr3 (22-120)||(52920676-52920774)
chr3 (32-87)||(12388676-12388731)
chr3 (21-120)||(37467573-37467672)
chr3 (184-230)||(16032689-16032734)
chr3 (22-120)||(13824303-13824403)
chr3 (20-120)||(31303660-31303760)
chr3 (21-120)||(17238743-17238841)
chr3 (21-120)||(20646426-20646525)
chr3 (21-120)||(29951228-29951326)
chr3 (21-120)||(30000382-30000480)
chr3 (16-65)||(14007903-14007952)
chr3 (187-228)||(29951389-29951430)
chr3 (187-228)||(30000543-30000584)
chr3 (16-68)||(14073007-14073059)
chr3 (21-89)||(16032782-16032850)
chr3 (41-89)||(40800128-40800176)
chr3 (21-120)||(12962890-12962989)
chr3 (19-54)||(19197655-19197690)
chr3 (176-230)||(26417620-26417674)
chr3 (30-88)||(47405249-47405307)
chr3 (22-119)||(28582379-28582476)
chr3 (19-55)||(6713395-6713431)
chr3 (20-68)||(8728814-8728862)
chr3 (20-68)||(9080701-9080749)
[»] scaffold0064 (1 HSPs)
scaffold0064 (30-226)||(43654-43861)
[»] chr7 (30 HSPs)
chr7 (15-226)||(13880754-13880963)
chr7 (16-226)||(9098031-9098251)
chr7 (130-230)||(13893895-13893995)
chr7 (20-120)||(13880372-13880472)
chr7 (21-120)||(11319673-11319772)
chr7 (20-120)||(30026159-30026259)
chr7 (20-120)||(44467319-44467418)
chr7 (21-120)||(10882964-10883063)
chr7 (21-120)||(12366541-12366640)
chr7 (21-87)||(13890737-13890803)
chr7 (21-102)||(13031878-13031958)
chr7 (20-120)||(4494742-4494841)
chr7 (21-85)||(13649002-13649066)
chr7 (21-120)||(13018315-13018412)
chr7 (21-120)||(13137715-13137814)
chr7 (22-119)||(33691518-33691615)
chr7 (21-85)||(13303124-13303188)
chr7 (176-226)||(19236986-19237036)
chr7 (20-85)||(28409337-28409402)
chr7 (52-120)||(5000677-5000745)
chr7 (21-120)||(29935169-29935266)
chr7 (187-226)||(39284518-39284557)
chr7 (187-230)||(41842227-41842269)
chr7 (16-66)||(16412333-16412383)
chr7 (30-119)||(9709633-9709722)
chr7 (193-230)||(13692504-13692541)
chr7 (42-119)||(14426783-14426860)
chr7 (21-89)||(39284386-39284455)
chr7 (21-85)||(16316367-16316431)
chr7 (21-120)||(19236803-19236902)
[»] chr2 (32 HSPs)
chr2 (1-159)||(22272346-22272514)
chr2 (1-119)||(44881416-44881534)
chr2 (1-99)||(19115411-19115508)
chr2 (1-94)||(18703064-18703156)
chr2 (1-99)||(26618823-26618920)
chr2 (20-100)||(18430673-18430753)
chr2 (1-87)||(41121470-41121555)
chr2 (21-118)||(24850401-24850497)
chr2 (20-120)||(23235273-23235373)
chr2 (21-85)||(22260706-22260770)
chr2 (21-120)||(22454725-22454824)
chr2 (21-120)||(39037391-39037490)
chr2 (21-120)||(30667255-30667354)
chr2 (20-120)||(9015105-9015205)
chr2 (16-68)||(20569777-20569829)
chr2 (21-85)||(25829405-25829469)
chr2 (21-88)||(18376672-18376739)
chr2 (21-120)||(19540665-19540763)
chr2 (22-85)||(22317913-22317976)
chr2 (187-230)||(23595467-23595510)
chr2 (176-230)||(18702897-18702951)
chr2 (198-230)||(25189557-25189589)
chr2 (21-85)||(38631255-38631319)
chr2 (187-230)||(18430838-18430881)
chr2 (21-120)||(30621453-30621552)
chr2 (21-120)||(30624074-30624173)
chr2 (195-230)||(39037547-39037582)
chr2 (184-226)||(18376800-18376842)
chr2 (20-54)||(24302690-24302724)
chr2 (187-224)||(22454887-22454924)
chr2 (29-85)||(24377371-24377427)
chr2 (20-68)||(24440499-24440547)
[»] scaffold0004 (3 HSPs)
scaffold0004 (16-120)||(243989-244092)
scaffold0004 (21-118)||(220511-220608)
scaffold0004 (187-226)||(220407-220446)
[»] chr6 (24 HSPs)
chr6 (30-120)||(10640224-10640313)
chr6 (33-215)||(3680655-3680835)
chr6 (21-118)||(19086424-19086521)
chr6 (20-120)||(13435804-13435904)
chr6 (20-85)||(19689023-19689088)
chr6 (21-85)||(9718150-9718214)
chr6 (16-73)||(12348434-12348491)
chr6 (30-85)||(12715222-12715277)
chr6 (21-120)||(24117100-24117199)
chr6 (30-88)||(20730507-20730565)
chr6 (15-73)||(23298259-23298316)
chr6 (15-68)||(25592842-25592895)
chr6 (24-89)||(26943848-26943913)
chr6 (21-85)||(25597769-25597833)
chr6 (1-68)||(17928121-17928186)
chr6 (22-117)||(26971989-26972084)
chr6 (184-230)||(19470835-19470881)
chr6 (193-230)||(10640365-10640402)
chr6 (193-226)||(15987404-15987437)
chr6 (16-68)||(7812318-7812370)
chr6 (21-89)||(15987497-15987565)
chr6 (30-118)||(21235371-21235459)
chr6 (20-68)||(24718545-24718593)
chr6 (16-68)||(30451310-30451361)
[»] scaffold0081 (1 HSPs)
scaffold0081 (15-226)||(40806-41021)
[»] chr5 (17 HSPs)
chr5 (15-230)||(25096591-25096799)
chr5 (15-230)||(25154561-25154769)
chr5 (21-89)||(23881364-23881432)
chr5 (181-230)||(21198931-21198980)
chr5 (31-120)||(642488-642577)
chr5 (31-120)||(6499489-6499578)
chr5 (184-230)||(9398674-9398720)
chr5 (193-230)||(642646-642683)
chr5 (21-120)||(21099475-21099574)
chr5 (21-85)||(21910829-21910893)
chr5 (21-85)||(26784644-26784708)
chr5 (20-118)||(7745432-7745530)
chr5 (42-120)||(9398551-9398628)
chr5 (16-50)||(34638795-34638829)
chr5 (193-226)||(21099643-21099676)
chr5 (21-85)||(21072027-21072091)
chr5 (72-100)||(22403951-22403979)
[»] chr4 (23 HSPs)
chr4 (1-118)||(11915989-11916104)
chr4 (16-100)||(17540704-17540788)
chr4 (15-120)||(6641947-6642051)
chr4 (1-100)||(41114479-41114579)
chr4 (1-96)||(17787766-17787859)
chr4 (21-120)||(29680305-29680404)
chr4 (22-120)||(56034824-56034922)
chr4 (22-118)||(14604655-14604751)
chr4 (20-120)||(37435267-37435367)
chr4 (30-119)||(10073189-10073278)
chr4 (21-85)||(3395926-3395990)
chr4 (21-120)||(19620839-19620938)
chr4 (176-230)||(41114668-41114722)
chr4 (193-230)||(6641843-6641880)
chr4 (16-73)||(11901528-11901585)
chr4 (187-224)||(40846265-40846302)
chr4 (16-50)||(10250157-10250191)
chr4 (30-119)||(13575900-13575989)
chr4 (193-230)||(15139387-15139424)
chr4 (30-87)||(16853778-16853835)
chr4 (21-89)||(40846379-40846448)
chr4 (42-119)||(54680164-54680241)
chr4 (21-85)||(9141163-9141227)
[»] scaffold0364 (2 HSPs)
scaffold0364 (1-120)||(6262-6379)
scaffold0364 (184-225)||(6177-6218)
[»] scaffold0022 (1 HSPs)
scaffold0022 (15-226)||(159224-159444)
[»] chr1 (16 HSPs)
chr1 (20-120)||(17024691-17024790)
chr1 (19-100)||(18896296-18896377)
chr1 (22-120)||(21191591-21191688)
chr1 (21-230)||(12613505-12613731)
chr1 (20-118)||(22154147-22154245)
chr1 (11-68)||(24227689-24227745)
chr1 (21-85)||(20954164-20954228)
chr1 (21-85)||(48704506-48704570)
chr1 (16-68)||(20109680-20109732)
chr1 (21-120)||(26701853-26701952)
chr1 (193-226)||(26702007-26702040)
chr1 (193-230)||(48704369-48704406)
chr1 (20-68)||(16870279-16870327)
chr1 (187-223)||(17024837-17024873)
chr1 (21-85)||(19717811-19717875)
chr1 (21-85)||(38282889-38282953)
[»] scaffold0040 (2 HSPs)
scaffold0040 (15-119)||(1239-1342)
scaffold0040 (176-230)||(1413-1467)
[»] chr8 (22 HSPs)
chr8 (1-100)||(22461399-22461497)
chr8 (11-120)||(19956129-19956238)
chr8 (15-120)||(19707767-19707871)
chr8 (21-120)||(19156446-19156545)
chr8 (21-120)||(20382184-20382283)
chr8 (20-120)||(17441610-17441710)
chr8 (21-120)||(602523-602621)
chr8 (21-120)||(20255356-20255455)
chr8 (30-100)||(18772912-18772982)
chr8 (187-230)||(17701903-17701946)
chr8 (20-85)||(16189298-16189363)
chr8 (11-68)||(23772683-23772739)
chr8 (21-225)||(18722419-18722634)
chr8 (31-120)||(17525528-17525616)
chr8 (20-120)||(19943501-19943601)
chr8 (20-120)||(18120911-18121011)
chr8 (23-225)||(18730766-18730979)
chr8 (187-226)||(19707667-19707706)
chr8 (22-85)||(21933200-21933263)
chr8 (16-100)||(26833322-26833416)
chr8 (22-60)||(23263389-23263427)
chr8 (21-85)||(29693616-29693680)
[»] scaffold0861 (1 HSPs)
scaffold0861 (22-120)||(4688-4786)
[»] scaffold0116 (1 HSPs)
scaffold0116 (20-120)||(20710-20810)
[»] scaffold0020 (1 HSPs)
scaffold0020 (1-96)||(145160-145253)
[»] scaffold0273 (2 HSPs)
scaffold0273 (1-96)||(8119-8218)
scaffold0273 (176-226)||(5795-5845)
[»] scaffold0334 (1 HSPs)
scaffold0334 (20-120)||(10065-10165)
[»] scaffold0056 (1 HSPs)
scaffold0056 (1-88)||(35903-35990)
[»] scaffold0025 (1 HSPs)
scaffold0025 (15-89)||(74866-74940)
[»] scaffold0261 (1 HSPs)
scaffold0261 (21-89)||(5694-5762)
[»] scaffold0171 (1 HSPs)
scaffold0171 (20-120)||(27184-27284)
[»] scaffold0084 (1 HSPs)
scaffold0084 (21-120)||(32743-32843)
[»] scaffold0047 (2 HSPs)
scaffold0047 (1-89)||(10171-10258)
scaffold0047 (187-226)||(10072-10111)
[»] scaffold0005 (1 HSPs)
scaffold0005 (22-118)||(212627-212723)
[»] scaffold0916 (1 HSPs)
scaffold0916 (16-73)||(2381-2438)
[»] scaffold0359 (1 HSPs)
scaffold0359 (20-120)||(5430-5531)
[»] scaffold0026 (3 HSPs)
scaffold0026 (189-230)||(151775-151816)
scaffold0026 (21-85)||(8203-8267)
scaffold0026 (21-85)||(60322-60386)
[»] scaffold0243 (1 HSPs)
scaffold0243 (21-85)||(4750-4814)
[»] scaffold0146 (1 HSPs)
scaffold0146 (21-120)||(15358-15456)
[»] scaffold0485 (1 HSPs)
scaffold0485 (20-118)||(9116-9213)
[»] scaffold0066 (1 HSPs)
scaffold0066 (52-121)||(60656-60724)
[»] scaffold0003 (2 HSPs)
scaffold0003 (30-119)||(89820-89909)
scaffold0003 (16-66)||(1045-1095)
[»] scaffold0161 (1 HSPs)
scaffold0161 (24-120)||(9880-9975)
[»] scaffold0083 (1 HSPs)
scaffold0083 (21-85)||(25732-25796)
[»] scaffold0035 (1 HSPs)
scaffold0035 (21-120)||(19214-19313)
[»] scaffold0251 (1 HSPs)
scaffold0251 (22-88)||(7993-8059)
[»] scaffold0217 (1 HSPs)
scaffold0217 (22-88)||(19338-19404)
[»] scaffold0007 (1 HSPs)
scaffold0007 (22-88)||(143394-143460)
[»] scaffold1359 (1 HSPs)
scaffold1359 (42-119)||(449-526)
[»] scaffold0324 (2 HSPs)
scaffold0324 (187-224)||(10128-10165)
scaffold0324 (21-89)||(10240-10309)


Alignment Details
Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 19249201 - 19249407
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||||||||||| || |||||||||||| |||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||    
T  19249201 ataggttctggaagaacaaatgagagcactggaatcaacaagaatgaagcttgaagcatctgaagaaaagtggttctgaagttcaaatgctcctgaagtg 19249300  T
Q  120 agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagacttaaagct 219  Q
    |    | |  ||||||||| |||||| ||||||||||||| ||||||| ||||||||||| ||||| |||||||||| ||||||||||||||||||||||    
T  19249301 a----tgacgtcatcagaagcacctcatcagaagcaacatcactagaagcagtttttcatcaggagctgaagatcattagaagatgagagacttaaagct 19249396  T
Q  220 tcaaaggttgt 230  Q
    |||||||||||    
T  19249397 tcaaaggttgt 19249407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 126 - 230
Target Start/End: Original strand, 12388763 - 12388867
Alignment:
Q  126 aagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaag 225  Q
    |||||||||| || |||||| ||||||||||||| ||||||| ||||||||||| | ||| |||||||||| ||||||||||||||||||||||||||||    
T  12388763 aagttcatcataagcacctcatcagaagcaacatcactagaagcagtttttcatcaagagctgaagatcataagaagatgagagacttaaagcttcaaag 12388862  T
Q  226 gttgt 230  Q
    |||||    
T  12388863 gttgt 12388867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 20725452 - 20725369
Alignment:
Q  31 aagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctga 115  Q
    |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||| ||||    
T  20725452 aagaacaaatgagagcaatgaaatcaacaagaaggaagcttgaagcatctgaagaaaagaggttctaaag-tcaagtgcttctga 20725369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 16199582 - 16199695
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    |||||||||||||||| | ||||||||| || |||||||||||||||||| |||||||||||| |||| ||||||| |||||||||||| | | ||||||    
T  16199582 ttagtgtctttttaaa-gtataggttctggaggaacaaatgagagcaatggaatcaacaagaaagaagcttgaagcatctgaagaaaagtgctcctgaag 16199680  T
Q  101 ttcaagtgctcctgaa 116  Q
     |||||||||||||||    
T  16199681 -tcaagtgctcctgaa 16199695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 6091103 - 6091005
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||||| |||||||||| |||||||||||||||||||| || |||| ||||||| |||||||| ||| | | |||||||| |||||||| ||||||    
T  6091103 ataggttctggaagaacaaaagagagcaatgaaatcaacaaaaatgaagcttgaagcatctgaagagaagtgctcctgaagttaaagtgctcatgaagt 6091005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 26417489 - 26417555
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttct 96  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||||| |||||||    
T  26417489 gaagaacaaatgagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaataggttct 26417555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 12968713 - 12968643
Alignment:
Q  17 agcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    ||||||||||||||||||||||||||| | |||| ||||||||||||||||| |||||| ||||||||||||    
T  12968713 agcataggttctagaagaacaaatgagggtaatggaatcaacaagaaggaagcttgaag-gtctgaagaaaa 12968643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 14392795 - 14392894
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||| | | ||||||||  ||||||| ||||||| |||||||| ||| | | |||||||| |||||||||||||||||    
T  14392795 taggttctggaagaacaaaagagagctaaggaatcaacagaaaggaagcttgaagcatctgaagagaagtgctcctgaagttaaagtgctcctgaagtga 14392894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 22803890 - 22803988
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||||||||||||| |||||||||| ||||||||| ||||||| ||||| | | |||||| ||| | | |||||||| |||||||||| ||||||    
T  22803890 taggttctagaagaacaaaagagagcaatggaatcaacaaaaaggaagcttgaaacatttgaagagaagtgctcctgaagtt-aagtgctcctaaagtga 22803988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 52920774 - 52920676
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||| |||||||||| |||||| | | ||||||||| ||||||| ||||||| |||||||| ||| | | |||||||  |||||||||||||||||    
T  52920774 aggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctcctgaagtaaaagtgctcctgaagtga 52920676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 32 - 87
Target Start/End: Original strand, 12388676 - 12388731
Alignment:
Q  32 agaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaa 87  Q
    |||||| |||||||||||| ||||||||||||||||| ||||||| ||||||||||    
T  12388676 agaacatatgagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaa 12388731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 37467672 - 37467573
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||  ||||||||| |||| ||||| ||||||||| ||||||| ||||||| |||||||| ||| | | |||||||  ||| |||||||||||||    
T  37467672 taggttctgaaagaacaaaagagaacaatggaatcaacaaaaaggaagcttgaagcatctgaagataagtgctcctgaagtcaaagagctcctgaagtga 37467573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 16032734 - 16032689
Alignment:
Q  184 agttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  16032734 agttgaag-tcatcagaagatgagagacttaaagcttcaaaggttgt 16032689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 13824403 - 13824303
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgt--ctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| |||||||||| |||||||||| ||||||||| ||||||| |||||| |   ||||||| ||| | | |||||||  ||||||||||||||||    
T  13824403 aggttctggaagaacaaaagagagcaatggaatcaacaaaaaggaagcttgaagtgctcctgaagagaagtgctcctgaagtaaaagtgctcctgaagtg 13824304  T
Q  120 a 120  Q
    |    
T  13824303 a 13824303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 31303760 - 31303660
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||| |||| |||||||||| ||||||||   ||||||||| ||||||| || |||| |||||||| ||| | | |||||||  ||||||||||||||||    
T  31303760 atagtttctggaagaacaaaagagagcaaaagaatcaacaaaaaggaagcttaaagcatctgaagagaagtgctcctgaagtcaaagtgctcctgaagtg 31303661  T
Q  120 a 120  Q
    |    
T  31303660 a 31303660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 17238743 - 17238841
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||  ||||||||| |||||| | | ||||||||| ||||||| || ||||||||||||| ||| | | |||||| ||||||||| |||||||||    
T  17238743 taggttctttaagaacaaaagagagctaaggaatcaacaaaaaggaagcttaaagcgtctgaagagaagtgctcctgaag-tcaagtgcttctgaagtga 17238841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 20646525 - 20646426
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||||||||||||| |||||||| | ||||||||| | ||||| || |||||| |||||| ||| | | |||||||  ||||| || ||||||||    
T  20646525 taggttctagaagaacaaaagagagcaaaggaatcaacaaaatggaagcttaaagcgtttgaagagaagtgctcctgaagtcaaagtgttcatgaagtga 20646426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 29951228 - 29951326
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||| || |||||||||| |||||| | ||| ||||||| ||||||| ||||||| |||| |||| || | | ||||||| ||||||||||||||||||    
T  29951228 taggtcctggaagaacaaaagagagctaagaagtcaacaaaaaggaagcttgaagcatctgtagaatagtgctactgaagt-caagtgctcctgaagtga 29951326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 30000382 - 30000480
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||| || |||||||||| |||||| | ||| ||||||| ||||||| ||||||| |||| |||| || | | ||||||| ||||||||||||||||||    
T  30000382 taggtcctggaagaacaaaagagagctaagaagtcaacaaaaaggaagcttgaagcatctgtagaatagtgctactgaagt-caagtgctcctgaagtga 30000480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 14007952 - 14007903
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaagg 65  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||| ||||    
T  14007952 aagcataggttctagaagaacaaatgagagctatggaatctacaaaaagg 14007903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 29951389 - 29951430
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggtt 228  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  29951389 tgaagttcatcagaagacgagagacttaaagcttcaaaggtt 29951430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 228
Target Start/End: Original strand, 30000543 - 30000584
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggtt 228  Q
    ||||| ||||||||||| ||||||||||||||||||||||||    
T  30000543 tgaagttcatcagaagacgagagacttaaagcttcaaaggtt 30000584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 14073059 - 14073007
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||| ||||| ||||||||||||||||||||| |||| |||| |||||||    
T  14073059 aagcatatgttctggaagaacaaatgagagcaatggaatctacaaaaaggaag 14073007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 16032850 - 16032782
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||||  |||||||||| ||||||| || ||||||||| || |||| ||||||| ||||||||||||    
T  16032850 taggttccggaagaacaaaagagagcattggaatcaacaaaaatgaagcttgaagcatctgaagaaaag 16032782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 89
Target Start/End: Complemental strand, 40800176 - 40800128
Alignment:
Q  41 gagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||||| ||||||||||| ||||||| || |||||||||||||||||    
T  40800176 gagagcaaagaaatcaacaaaaaggaagcttaaagcgtctgaagaaaag 40800128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 12962890 - 12962989
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||  | | | ||||||||| ||||||| |||||||||||||||| ||| | |  ||||||  |||||||| ||||||||    
T  12962890 taggttctggaagaacaaaagaggactaaggaatcaacaaaaaggaagcttgaagcgtctgaagagaagtgctattgaagtcaaagtgctcttgaagtga 12962989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 54
Target Start/End: Original strand, 19197655 - 19197690
Alignment:
Q  19 cataggttctagaagaacaaatgagagcaatgaaat 54  Q
    |||||||||| |||||||||||||||||||||||||    
T  19197655 cataggttctggaagaacaaatgagagcaatgaaat 19197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 26417620 - 26417674
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||| |||||||||||||||||||||| ||| ||| || ||||||||||| ||||    
T  26417620 tcatcaggagttgaagatcatcagaagctgaaagaattgaagcttcaaagtttgt 26417674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 47405249 - 47405307
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    |||||||||  |||||||| | ||||||||| ||||||| || ||||||||||||||||    
T  47405249 gaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaa 47405307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 119
Target Start/End: Complemental strand, 28582476 - 28582379
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| |||||||||  ||||| || ||||||||||| ||||||| || || |||||||||| ||  | | ||||||   ||||||||||||||||    
T  28582476 aggttctggaagaacaatagagagtaaagaaatcaacaaaaaggaagcttaaaacgtctgaagagaactgctcctgaagacaaagtgctcctgaagtg 28582379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Complemental strand, 6713431 - 6713395
Alignment:
Q  19 cataggttctagaagaacaaatgagagcaatgaaatc 55  Q
    |||||||| | ||||||||||||||||||||||||||    
T  6713431 cataggttgtggaagaacaaatgagagcaatgaaatc 6713395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 8728814 - 8728862
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||| ||||||||||||||||||||| |||  |||| |||||||    
T  8728814 ataggttctggaagaacaaatgagagcaatggaatttacaaaaaggaag 8728862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 9080701 - 9080749
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||| ||||||||||||||||||||| |||  |||| |||||||    
T  9080701 ataggttctggaagaacaaatgagagcaatggaatttacaaaaaggaag 9080749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 102; Significance: 8e-51; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 30 - 226
Target Start/End: Original strand, 43654 - 43861
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg---------- 119  Q
    ||||||||||| ||||||||| ||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||              
T  43654 gaagaacaaattagagcaatggaatcagcaagaaggaagcttgaagcatctgaagaaaagaggttctgaagttcaagtgctcttgaagtgatgacgtcat 43753  T
Q  120 -agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagacttaaagc 218  Q
     ||||  ||||||||||||| |||||  ||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||||||||||||| |    
T  43754 cagaagcaagttcatcagaagcacctaatcagaagcaacatcaccagaagcagtttttcatcaggagatgaagatcatcagaagatgagagacttaaaac 43853  T
Q  219 ttcaaagg 226  Q
    ||||||||    
T  43854 ttcaaagg 43861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 3e-44; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 13880963 - 13880754
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    |||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||| ||||| |||||||||||||    
T  13880963 aaagcaaaggttctggaagaacaaatgagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaagtggttatgaag-tcaagtgctcctg 13880865  T
Q  115 aagtgagaaataagttcatcagaaac-acctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaaga--tgagagac 211  Q
    |||||    || |  ||||||||| | |  || ||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||||   ||||||     
T  13880864 aagtg----atgacgtcatcagaagcaagttcatcagaagcaacatcactagaagcagtttttcatcaggagttgaacatcatcagaagaggagagagaa 13880769  T
Q  212 ttaaagcttcaaagg 226  Q
    |||||||||||||||    
T  13880768 ttaaagcttcaaagg 13880754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 226
Target Start/End: Original strand, 9098031 - 9098251
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctga 115  Q
    |||| ||| |||| ||||||||||||||||||||| ||||||||||| ||||| ||||||| ||||||||||||||||||||||| ||||||||||||||    
T  9098031 aagcttagattctggaagaacaaatgagagcaatggaatcaacaagatggaagcttgaagcatctgaagaaaagaggttctgaag-tcaagtgctcctga 9098129  T
Q  116 agtg-----------agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagat 204  Q
    ||||           ||||  |||||||| |||| |||||| ||| |||||  || || |||| ||||||||||| || || ||||||||||||||||||    
T  9098130 agtgatgatgtcatcagaagcaagttcattagaagcacctcatcaaaagcattatcaccagaagcagtttttcatcagaagctgaagatcatcagaagat 9098229  T
Q  205 gagagacttaaagcttcaaagg 226  Q
    |||||| |||||||||||||||    
T  9098230 gagagaattaaagcttcaaagg 9098251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 130 - 230
Target Start/End: Original strand, 13893895 - 13893995
Alignment:
Q  130 tcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttg 229  Q
    |||||| || |||||| ||||||||||||| || |||| ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||||    
T  13893895 tcatcaaaagcacctcatcagaagcaacatcaccagaagcagtttttcatcaggagctgaagatcatcagaagatgaaatacttaaagcttcaaaggttg 13893994  T
Q  230 t 230  Q
    |    
T  13893995 t 13893995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 13880472 - 13880372
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| |||||||| | ||||||||| ||||||| || ||||||||||||| ||| | |||||||||  ||||||||||||||||    
T  13880472 ataggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagagaagtgcttctgaagtcaaagtgctcctgaagtg 13880373  T
Q  120 a 120  Q
    |    
T  13880372 a 13880372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 11319772 - 11319673
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||||||||||||||||| ||||||| || ||||||||||||| ||| | | ||||||   |||||||||||||||||    
T  11319772 taggttctggaagaacaaaagagagcaatgaaatcaacaaaaaggaagcttaaagcgtctgaagagaagtgctcctgaagccaaagtgctcctgaagtga 11319673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 30026259 - 30026159
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| | |||||||||| |||||||| | ||||||||| ||||||| ||||||| |||||||| ||| | |||||||||  ||||||||||||||||    
T  30026259 ataggttatggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgcttctgaagtaaaagtgctcctgaagtg 30026160  T
Q  120 a 120  Q
    |    
T  30026159 a 30026159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 44467418 - 44467319
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| ||||||||||  ||||||||| ||||||||| ||||||||||||||| |||||||| ||| | | |||||| |  |||||||||||||||    
T  44467418 ataggttctggaagaacaaaatagagcaatggaatcaacaaaaaggaagtttgaagcatctgaagagaagtgctcctgaag-tatagtgctcctgaagtg 44467320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 10882964 - 10883063
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||||| | ||||||||| || |||| || ||||||||||||| ||| | | |||||||  |||||||||||||||||    
T  10882964 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaatgaagcttaaagcgtctgaagagaagtgctactgaagtcaaagtgctcctgaagtga 10883063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 12366541 - 12366640
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||| ||| |||||||||| ||||||||| ||||||| ||||||| ||| |||| ||| | | ||||| || |||||||||||||||||    
T  12366541 taggttctggaagaaaaaaagagagcaatggaatcaacaaaaaggaagcttgaagcatctaaagagaagtgctcctgaatttaaagtgctcctgaagtga 12366640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 87
Target Start/End: Original strand, 13890737 - 13890803
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaa 87  Q
    |||||||| | ||||||||||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  13890737 taggttctgggagaacaaatgaaagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaa 13890803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 13031878 - 13031958
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagtt 102  Q
    |||||||| |||||||||| |||||||||| |||||||||| | |||| |||||||||||||||||||| | | ||||||||    
T  13031878 taggttctggaagaacaaa-gagagcaatggaatcaacaaggatgaagcttgaagcgtctgaagaaaagtgctcctgaagtt 13031958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 4494841 - 4494742
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| ||||||| || |||||||||||||||||||| ||||||| ||||||| ||| |||| ||| | | |||||| |  |||||||||||||||    
T  4494841 ataggttctggaagaacgaaagagagcaatgaaatcaacaaaaaggaagcttgaagcatctaaagagaagtgctcctgaag-tatagtgctcctgaagtg 4494743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 13649066 - 13649002
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||||||| |||||||| | ||||||||| |||||||||| | |||||||||||    
T  13649066 taggttctagaagaacaaaagagagcaaaggaatcaacaaaaaggaagtttaaggcgtctgaaga 13649002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 13018315 - 13018412
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||  |||||||||| |||||||||| |||||||||| | |||| || ||||||||||||||||| | | ||||||||  ||||||||||||||||    
T  13018315 taggttcgggaagaacaaa-gagagcaatggaatcaacaaggatgaagcttcaagcgtctgaagaaaagtgctcctgaagtt-tagtgctcctgaagtga 13018412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 13137715 - 13137814
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||  | | ||||||||| ||||||| ||||||| |||||||| ||| | | |||||||  |||||||||||||||||    
T  13137715 taggttctggaagaacaaaagagaggtaaggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctcctgaagtcaaagtgctcctgaagtga 13137814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 119
Target Start/End: Original strand, 33691518 - 33691615
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| |||||||||  |||||||| | ||||||||| |||||||||| ||||||||||||| ||  | | ||||||   ||||||||||||||||    
T  33691518 aggttctggaagaacaatagagagcaaaggaatcaacaaaaaggaagtttaaagcgtctgaagagaactgctcctgaagacaaagtgctcctgaagtg 33691615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 13303188 - 13303124
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||| | |||||||||| |||||||| ||||||||||| || ||||||| |||||||||||||    
T  13303188 taggttatggaagaacaaaagagagcaaagaaatcaacaaaaaagaagtttaaagcgtctgaaga 13303124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 19236986 - 19237036
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||||| ||||||| | |||||||||||||| |||||||||||||||    
T  19236986 tcattaggagctgaagattaccagaagatgagagagttaaagcttcaaagg 19237036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 28409402 - 28409337
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||||  ||||||||| ||||||||   |||| |||| ||||||||||||||||||||||||    
T  28409402 ataggttctgtaagaacaaaagagagcaaatgaatcgacaaaaaggaagtttgaagcgtctgaaga 28409337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 5000677 - 5000745
Alignment:
Q  52 aatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||| ||||||||||||| | |||||||| ||| | | |||||||  |||||||||||||||||    
T  5000677 aatcaacaaaaaggaagtttgaaacatctgaagagaagtgatcctgaagtcaaagtgctcctgaagtga 5000745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 29935169 - 29935266
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||| || || ||||| |||| |||   ||||||||| ||||||||||||||||||    
T  29935169 taggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttaaatcgtctcaagagaagtt-ttctgaagt-caagtgctcctgaagtga 29935266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 39284518 - 39284557
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||||||||||||||||||| | |||||||||||||    
T  39284518 tgaagatcatcagaagatgagagaatcaaagcttcaaagg 39284557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 41842227 - 41842269
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||    
T  41842227 tgaagttcatcagaagatgagagactt-aagcttcaaaggttgt 41842269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 16412383 - 16412333
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaagga 66  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||| |||||    
T  16412383 aagcataggttctggaagaacaaataagagcaatgtaatctacaaaaagga 16412333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 9709633 - 9709722
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  ||||||||   ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  9709633 gaagaacaatagagagcaaatgaatcaacaaaaaggaagcttaaagcgtctgaagaaaactgctcctgaagacaaagtgctcctgaagtg 9709722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 13692541 - 13692504
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||  |||||||||||||||||||||||    
T  13692541 tcatcagaagatgtaagacttaaagcttcaaaggttgt 13692504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 14426860 - 14426783
Alignment:
Q  42 agagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| | ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  14426860 agagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaactgctcctgaagacaaagtgctcctgaagtg 14426783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 39284386 - 39284455
Alignment:
Q  21 taggttctagaagaacaaatga-gagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||||| ||||||||||| | |||  ||| ||||||||| ||||||| |||||| |||||||||||||    
T  39284386 taggttctggaagaacaaattaagagatatggaatcaacaaaaaggaagcttgaagtgtctgaagaaaag 39284455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 16316367 - 16316431
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||  ||||||||| |||||| | | ||||||||| ||||||| ||||||||||| ||||    
T  16316367 taggttctgaaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcgtctaaaga 16316431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 19236803 - 19236902
Alignment:
Q  21 taggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| |||||||||| | ||||  ||| ||||||||| |||||||  |||||| ||||||||| || | || ||||| ||||||||| ||||||||    
T  19236803 taggttctggaagaacaaattaagagttatggaatcaacaaaaaggaagcctgaagcatctgaagaatagtgattttgaag-tcaagtgcttctgaagtg 19236901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 22272514 - 22272346
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||  ||||||||||||| ||||||||    
T  22272514 ttagtgtctcttttaaagcataggttctggaagaacaaatgagagcaatggaatcaacaagaaggaaggttgaagcaactgaagaaaagagtttctgaag 22272415  T
Q  101 ttcaagtgctcctgaagtg-----------agaaataagttcatcagaaacacctcgtcagaagcaacat 159  Q
     |||| | |||||||||||           ||||| |||||||||||||||||||| |||||||||||||    
T  22272414 -tcaaatactcctgaagtgatgacgtcattagaaacaagttcatcagaaacacctcatcagaagcaacat 22272346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 44881534 - 44881416
Alignment:
Q  1 ttagtgtct-ttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaa 99  Q
    ||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || ||||    
T  44881534 ttagtgtctctttttaaggcataggttctggaagaacaaatgagagcaatgaaatcaacaagaaggaagcttgaagcatctgaagaaaagagattttgaa 44881435  T
Q  100 gttcaagtgctcctgaagtg 119  Q
    | ||||||||||||||||||    
T  44881434 g-tcaagtgctcctgaagtg 44881416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 19115508 - 19115411
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaa 99  Q
    ||||||||| ||||||  |||||||||| ||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||    
T  19115508 ttagtgtctctttaaac-cataggttctggaagaacaaatgagagcaatggaatcaacaggaaggaagcttgaagcgtctgaagaaaagaggttctgaa 19115411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 18703156 - 18703064
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggtt 94  Q
    ||||||||| |||||| |||||||||||| |||||||| | ||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  18703156 ttagtgtctctttaaa-gcataggttctacaagaacaagttagagcaatggaatcaacaagaaggaagcttgaagcgtctgaagaaaagaggtt 18703064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 26618823 - 26618920
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaa 99  Q
    ||||||||| ||| ||||||||| | || ||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  26618823 ttagtgtctcttttaaagcatagat-ctggaagaacaaatgagagcaatggaatcaacaagaaggaagcttgaagagtctgaagaaaagaggttatgaa 26618920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 100
Target Start/End: Original strand, 18430673 - 18430753
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||||||| |||||| ||||||| ||||||    
T  18430673 ataggttctggaagaacaaatgagagcaatataatcaacaagaaggaagcttgaagcgtatgaagacaagaggtcctgaag 18430753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 41121470 - 41121555
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaa 87  Q
    |||||||||||||||| | ||| ||||| ||||||||||||| ||||||| ||| ||||||||||||| ||||||| ||||||||||    
T  41121470 ttagtgtctttttaaa-gtataagttctcgaagaacaaatgaaagcaatggaataaacaagaaggaagcttgaagcatctgaagaaa 41121555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Original strand, 24850401 - 24850497
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||| ||||||| |||||||||||| | | |||||| |||||||||||||||||    
T  24850401 taggttctcgaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcatctgaagaaaagtgctcctgaag-tcaagtgctcctgaagt 24850497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 23235373 - 23235273
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||||||||||||| |||||||||  ||||||||| ||| ||| || ||||||||||||| ||| | |  ||||||  ||||||||||||||||    
T  23235373 ataggttctagaagaacaaaagagagcaattgaatcaacaaaaagtaagcttaaagcgtctgaagagaagtgctcttgaagtcaaagtgctcctgaagtg 23235274  T
Q  120 a 120  Q
    |    
T  23235273 a 23235273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 22260770 - 22260706
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||||||| |||||||| | ||||||||| |||||||||| | |||||||||||    
T  22260770 taggttctagaagaacaaaagagagcaaaggaatcaacaaaaaggaagtttaaggcgtctgaaga 22260706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 22454725 - 22454824
Alignment:
Q  21 taggttctagaagaacaaatga-gagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| ||||||||||| | |||| ||||||||||||| ||||||| ||||||| |||||||||||| | | |||||| || ||||||| |||||||    
T  22454725 taggttctggaagaacaaattaagagctatgaaatcaacaaaaaggaagcttgaagcatctgaagaaaagtgctcctgaag-tctagtgctcttgaagtg 22454823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 39037391 - 39037490
Alignment:
Q  21 taggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| |||||||||| ||||||| ||| ||||||||| ||||||| ||||||| |||||||| ||| | | |||||||| ||||||| ||||||||    
T  39037391 taggttctggaagaacaaattgagagctatggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctactgaagtt-aagtgcttctgaagtg 39037489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 30667354 - 30667255
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||  |||||||||  ||||||||| ||||||| ||||||| |||||||| ||| | | | |||||  |||||||||||||||||    
T  30667354 taggttctggaagaacaatagagagcaattgaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctcccgaagtcaaagtgctcctgaagtga 30667255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 9015105 - 9015205
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| |||||||| | ||||||||| | ||||| ||||||| |||||||| ||| | |  ||||||  ||||| ||||||||||    
T  9015105 ataggttctggaagaacaaaagagagcaaaggaatcaacaaaatggaagcttgaagcatctgaagagaagtgctcttgaagtaaaagtgatcctgaagtg 9015204  T
Q  120 a 120  Q
    |    
T  9015205 a 9015205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 20569829 - 20569777
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||||||| ||||||||||||||||||||| |||| |||| |||||||    
T  20569829 aagcataggttctggaagaacaaatgagagcaatggaatctacaaaaaggaag 20569777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 25829469 - 25829405
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||| | ||||||||| ||||||| || |||||||||||||    
T  25829469 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 25829405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 18376672 - 18376739
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||| ||||||| |||||||||||    
T  18376672 taggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcatctgaagaaaa 18376739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 19540763 - 19540665
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||| | |||||||||| |||||| | | ||||||||| ||| ||| || ||||||||||||||||| | | |||||| || ||||||||||||||||    
T  19540763 taggttttggaagaacaaaagagagctaaggaatcaacaaaaagaaagcttaaagcgtctgaagaaaagtgttcctgaag-tctagtgctcctgaagtga 19540665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 22317976 - 22317913
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||||||||||||  |||||||| | ||||||||| ||||||| || |||||||||||||    
T  22317976 aggttctagaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 22317913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 23595467 - 23595510
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||||||||| ||| |||||||||||||||||||    
T  23595467 tgaagatcatcagaagatgaaagaattaaagcttcaaaggttgt 23595510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 230
Target Start/End: Complemental strand, 18702951 - 18702897
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||| |||||||||||||||||||||| ||| ||| || ||||||||||||||||    
T  18702951 tcatcaggagttgaagatcatcagaagctgaaagaattgaagcttcaaaggttgt 18702897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 25189589 - 25189557
Alignment:
Q  198 agaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||||||||||||||||||||||    
T  25189589 agaagatgagagacttaaagcttcaaaggttgt 25189557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 38631319 - 38631255
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| ||| |||||| |||||||| ||||||||||| || |||| ||||||| ||||||||    
T  38631319 taggttctggaaaaacaaaagagagcaaagaaatcaacaaaaatgaagcttgaagcatctgaaga 38631255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 230
Target Start/End: Original strand, 18430838 - 18430881
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||||| ||| ||| |||||||||||||||||||    
T  18430838 tgaagatcatcagaagctgaaagaattaaagcttcaaaggttgt 18430881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 30621552 - 30621453
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||  |||||||||| ||||||||| ||||||| || |||| ||| |||| ||| | |   |||||  |||||||||||||||||    
T  30621552 taggttctggaagaacaatagagagcaatggaatcaacaaaaaggaagcttcaagcatctaaagagaagtgctctcgaagtcaaagtgctcctgaagtga 30621453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 30624173 - 30624074
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||  |||||||||| ||||||||| ||||||| || |||| ||| |||| ||| | |   |||||  |||||||||||||||||    
T  30624173 taggttctggaagaacaatagagagcaatggaatcaacaaaaaggaagcttcaagcatctaaagagaagtgctctcgaagtcaaagtgctcctgaagtga 30624074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 39037547 - 39037582
Alignment:
Q  195 atcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||||||||||| |||||||||||||    
T  39037547 atcagaagatgagagacttaaaacttcaaaggttgt 39037582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 18376800 - 18376842
Alignment:
Q  184 agttgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||| ||||  ||||||||||||||||||||||||||||    
T  18376800 agttgaagttcatttgaagatgagagacttaaagcttcaaagg 18376842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 24302690 - 24302724
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaat 54  Q
    ||||||||| |||||||||||||||||||||||||    
T  24302690 ataggttctggaagaacaaatgagagcaatgaaat 24302724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 22454887 - 22454924
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaa 224  Q
    ||||| || |||||||||||||||||||||||||||||    
T  22454887 tgaagttcttcagaagatgagagacttaaagcttcaaa 22454924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 85
Target Start/End: Complemental strand, 24377427 - 24377371
Alignment:
Q  29 agaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||| |||||||||  ||||||||| ||||||| | ||||| ||||||||    
T  24377427 agaagaacaaaagagagcaatagaatcaacaaaaaggaagctagaagcatctgaaga 24377371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 24440499 - 24440547
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||||||||||||||| |||||||||| |||  |||| |||||||    
T  24440499 ataggttctagaagaacaaacgagagcaatggaatttacaaaaaggaag 24440547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 120
Target Start/End: Original strand, 243989 - 244092
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctga 115  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||    
T  243989 aagcataggttctggaagaacaaattagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaagaggttctgaag-tcaagtgctcatga 244087  T
Q  116 agtga 120  Q
    |||||    
T  244088 agtga 244092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 220608 - 220511
Alignment:
Q  21 taggttctagaagaacaaat-gagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||||  |||||||||| |||||| ||| ||||||||| ||||||  |||||||||||||||||||| | | |||||| |||||||||||||||||    
T  220608 taggttctgaaagaacaaattgagagctatggaatcaacaaaaaggaaccttgaagcgtctgaagaaaagtgctcctgaag-tcaagtgctcctgaagt 220511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 220446 - 220407
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  220446 tgaagttcatcaggagatgagagacttaaagcttcaaagg 220407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 30 - 120
Target Start/End: Original strand, 10640224 - 10640313
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||| |||||||||||||||||||    
T  10640224 gaagaacaaatgagagcaatgaaatcaacaagaaggaagcttgaagcatatgaagaaaagaggttctgaag-tcaagtgctcctgaagtga 10640313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 33 - 215
Target Start/End: Complemental strand, 3680835 - 3680655
Alignment:
Q  33 gaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga-gaaataagttc 131  Q
    ||||||| |||||||| |||||| |||||||||||| || |||| |||||||||||| |||||||||| ||||||||| ||||||||| ||  | |  ||    
T  3680835 gaacaaaagagagcaaagaaatctacaagaaggaagcttaaagcatctgaagaaaagtggttctgaag-tcaagtgctgctgaagtgatgacgtca--tc 3680739  T
Q  132 atcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagacttaa 215  Q
    ||||||| |||||| | ||||||||||| || |||| || |||||||| | ||  |||||||||||||||| ||||||| ||||    
T  3680738 atcagaatcacctcattagaagcaacatcaccagaagcaatttttcatcaagaactgaagatcatcagaagctgagagaattaa 3680655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 19086521 - 19086424
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||| |||||||||||||||| ||| | | |||||||  |||||||||||||||    
T  19086521 taggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagt 19086424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 13435904 - 13435804
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  ||||||||| |||||||||| ||||||||| ||||||| ||||||| |||||||| ||| | | || ||||  ||||||||||||||||    
T  13435904 ataggttctgaaagaacaaaagagagcaatggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctcctaaagtaaaagtgctcctgaagtg 13435805  T
Q  120 a 120  Q
    |    
T  13435804 a 13435804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 19689088 - 19689023
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||| |||||||||| ||||||||   ||||||||| ||||||||||||||||||||||||    
T  19689088 ataggttctggaagaacaaaagagagcaaatgaatcaacaaaaaggaagtttgaagcgtctgaaga 19689023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 9718214 - 9718150
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||||||| |||||||| | ||||||||| ||||||| || |||||||||||||    
T  9718214 taggttctagaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 9718150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 12348491 - 12348434
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttga 73  Q
    ||||||||||||| |||||||||||||||||||||||||| | || ||||||| ||||    
T  12348491 aagcataggttctcgaagaacaaatgagagcaatgaaatctagaaaaaggaagcttga 12348434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Original strand, 12715222 - 12715277
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||||| |||||||| ||||||||||| ||||||| ||||||| ||||||||    
T  12715222 gaagaacaaaagagagcaaagaaatcaacaaaaaggaagcttgaagcatctgaaga 12715277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 24117199 - 24117100
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||| | |||||||||| |||||| | | ||||||||| ||||||| || |||| |||||||| ||| | | |||||||  |||||||||||||||||    
T  24117199 taggttatggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttaaagcatctgaagagaagtgctcctgaagtcaaagtgctcctgaagtga 24117100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 20730507 - 20730565
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    |||||||||  |||||||| ||||||||||| ||||||| || ||||||||||||||||    
T  20730507 gaagaacaatagagagcaaagaaatcaacaaaaaggaagctttaagcgtctgaagaaaa 20730565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 73
Target Start/End: Complemental strand, 23298316 - 23298259
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttga 73  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| ||||    
T  23298316 aaagcataggttct-gaagaacaaatgagagcaatggaatctacaaaaaggaagcttga 23298259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 68
Target Start/End: Complemental strand, 25592895 - 25592842
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||| ||||| ||||||||||||||||||||| |||| |||| |||||||    
T  25592895 aaagcataagttctggaagaacaaatgagagcaatggaatctacaaaaaggaag 25592842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 26943913 - 26943848
Alignment:
Q  24 gttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||| ||||||||||||||||||||  |||||||||||||  | ||||||| ||||||| ||||    
T  26943913 gttctaaaagaacaaatgagagcaatgggatcaacaagaaggttgcttgaagcatctgaaggaaag 26943848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 25597833 - 25597769
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||| ||| |||||||||| ||||||||| ||||||| |  |||| ||||||||    
T  25597833 taggttctagaagaataaaagagagcaatggaatcaacaaaaaggaagctaaaagcatctgaaga 25597769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 17928186 - 17928121
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||||||  ||||||||||||||| ||||||||||||||||||||  | ||||||| |||||||    
T  17928186 ttagtgtcttta-aaaagcataggttct-gaagaacaaatgagagcaatagattcaacaaaaaggaag 17928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 117
Target Start/End: Original strand, 26971989 - 26972084
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaag 117  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||||||  || ||||||||||||| ||  | |||||||||  ||||||| ||||||    
T  26971989 aggttctggaagaacaatggagagcaaaggaatcaacaaaaaggaatcttaaagcgtctgaagagaactgcttctgaagtcaaagtgctactgaag 26972084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 19470881 - 19470835
Alignment:
Q  184 agttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||||||||||||| |||||||||||  | ||||||||||||||||    
T  19470881 agttgaagatcatcaaaagatgagagaactgaagcttcaaaggttgt 19470835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 10640365 - 10640402
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  10640365 tcatcagaagctgagagaattaaagcttcaaaggttgt 10640402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 15987437 - 15987404
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||||||||||||||||| |||||||||||    
T  15987437 tcatcagaagatgagagacttagagcttcaaagg 15987404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Complemental strand, 7812370 - 7812318
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||||||| ||||||||||||| ||||||  |||| |||| |||||||    
T  7812370 aagcataggttctggaagaacaaatgaaagcaattgaatctacaaaaaggaag 7812318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 15987565 - 15987497
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    ||||||||  || |||||| |||||| | | ||||||||| ||||||| ||||||| ||||||||||||    
T  15987565 taggttctgaaaaaacaaaagagagctaaggaatcaacaaaaaggaagcttgaagcatctgaagaaaag 15987497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 21235459 - 21235371
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    |||||||||  |||||||| | |||| |||| ||||||| || ||||||||||||||||  | | ||||||   |||||||||||||||    
T  21235459 gaagaacaatagagagcaaaggaatctacaaaaaggaagcttaaagcgtctgaagaaaactgctcctgaagacaaagtgctcctgaagt 21235371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 24718545 - 24718593
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||| |||||||||||||||||||| ||||  |||| |||||||    
T  24718545 ataggttctggaagaacaaatgagagcaataaaatttacaaaaaggaag 24718593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 30451310 - 30451361
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||||||| ||||||||||||||||||||| |||| | || |||||||    
T  30451310 aagcataggttct-gaagaacaaatgagagcaatggaatctataaaaaggaag 30451361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0081 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0081
Description:

Target: scaffold0081; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 41021 - 40806
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    ||||| |||||||| ||||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||| |||||||||  ||||| |||||||    
T  41021 aaagcttaggttctggaagaacaaatgagagcaatggaatcaacaaaaaggaagtttgaaccatctgaagaaaagtggttctgaa-ctcaagggctcctg 40923  T
Q  115 aagtg-----------agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaaga 203  Q
    |||||           |||| |||| ||||||||| |||||| | ||||||||||| || |||| ||||||| |||       |||||||||||||||||    
T  40922 aagtggtgatgtcatcagaagtaagatcatcagaagcacctcattagaagcaacatcaccagaagcagttttccat------ctgaagatcatcagaaga 40829  T
Q  204 tgagagacttaaagcttcaaagg 226  Q
    ||||||| || ||||||||||||    
T  40828 tgagagaattgaagcttcaaagg 40806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 25096591 - 25096799
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagt--tcaagtgctcc 112  Q
    ||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||  | | ||  ||     
T  25096591 aaagcgtaggttctgtgagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcatctgaagaaa-gtgctcctgaagtgatgacgtcatc- 25096688  T
Q  113 tgaagtgagaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagact 212  Q
           ||||  ||||||||||||| |||| ||||||||||||||| || | || |||||||||||  |||| |||||||||||| ||||| |||||||    
T  25096689 -------agaagcaagttcatcagaagcaccccgtcagaagcaacatcaccaaaagcagtttttcatccggagctgaagatcatcataagataagagact 25096781  T
Q  213 taaagcttcaaaggttgt 230  Q
    ||||||||||||||||||    
T  25096782 taaagcttcaaaggttgt 25096799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 230
Target Start/End: Original strand, 25154561 - 25154769
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagt--tcaagtgctcc 112  Q
    ||||| ||||||||   ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | | | |||||||  | | ||  ||     
T  25154561 aaagcgtaggttctgtgagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcatctgaagaaa-gtgctcctgaagtgatgacgtcatc- 25154658  T
Q  113 tgaagtgagaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagagact 212  Q
           ||||  ||||||||||||| |||| ||||||||||||||| || | || |||||||||||  |||| |||||||||||| ||||| |||||||    
T  25154659 -------agaagcaagttcatcagaagcaccccgtcagaagcaacatcaccaaaagcagtttttcatccggagctgaagatcatcataagataagagact 25154751  T
Q  213 taaagcttcaaaggttgt 230  Q
    ||||||||||||||||||    
T  25154752 taaagcttcaaaggttgt 25154769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 23881432 - 23881364
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    ||||||||||||||||||| || ||||||| |||||||||||| |||| ||||||||||||||||||||    
T  23881432 taggttctagaagaacaaaagatagcaatggaatcaacaagaatgaagcttgaagcgtctgaagaaaag 23881364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 21198931 - 21198980
Alignment:
Q  181 aggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  21198931 aggagctgaagttcatcagaagatgagagacttaaagcttcaaaggttgt 21198980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 642488 - 642577
Alignment:
Q  31 aagaacaaat-gagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||||| |||||| ||| |||| |||| ||||||| |||||||||||||||||||| | | |||||| ||||||||| |||||||||    
T  642488 aagaacaaattgagagctatggaatcgacaaaaaggaagcttgaagcgtctgaagaaaagtgatcctgaag-tcaagtgcttctgaagtga 642577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Complemental strand, 6499578 - 6499489
Alignment:
Q  31 aagaacaaat-gagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||||| |||||| ||||||||||||| ||||||| ||||||| |||||| | ||| | |||||||| |||||||||| ||||||||    
T  6499578 aagaacaaattgagagctatgaaatcaacaaaaaggaagcttgaagcatctgaaaagaagtgtttctgaag-tcaagtgctcatgaagtga 6499489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 9398674 - 9398720
Alignment:
Q  184 agttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||    
T  9398674 agttgaagttcatcagaagatgagagacttaaaggttcaaaggttgt 9398720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 642646 - 642683
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||||||||||||||||||||||||||||||||||||    
T  642646 tcatcagaagatgagagacttaaagcttcaaaggttgt 642683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 21099475 - 21099574
Alignment:
Q  21 taggttctagaagaacaaatga-gagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||| | ||||||||||| | |||| ||| ||||||||| ||||| | |||||||||||||||||||| | |  ||||| ||||||||||||||||||    
T  21099475 taggttttggaagaacaaattaagagccatggaatcaacaaaaaggaggcttgaagcgtctgaagaaaagtgctcatgaag-tcaagtgctcctgaagtg 21099573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 21910893 - 21910829
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||||||| ||||||||   ||||||||| ||||||| || |||||||||||||    
T  21910893 taggttctagaagaacaaaagagagcaaatgaatcaacaaaaaggaagcttaaagcgtctgaaga 21910829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 26784708 - 26784644
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||| ||| |||||||||| |||||||| | ||||||||| ||||||| || |||||||||||||    
T  26784708 taggctcttgaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 26784644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 7745432 - 7745530
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    |||||||||  ||||||||| ||||||||    |||||||| ||||||| |||||||||||||||| ||| | | || ||||   ||||||||||||||    
T  7745432 ataggttctgaaagaacaaaagagagcaaatggatcaacaaaaaggaagcttgaagcgtctgaagagaagtgctcctaaagtcatagtgctcctgaagt 7745530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 120
Target Start/End: Original strand, 9398551 - 9398628
Alignment:
Q  42 agagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||| ||| ||||||||| ||||||| ||||||| | |||||| ||| | | ||||||| ||||||||||||||||||    
T  9398551 agagctatggaatcaacaaaaaggaagcttgaagcatttgaagagaagtgctgctgaagt-caagtgctcctgaagtga 9398628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 34638829 - 34638795
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatg 50  Q
    ||||||||||||||||||||||||| |||||||||    
T  34638829 aagcataggttctagaagaacaaattagagcaatg 34638795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 21099643 - 21099676
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||||||| |||||||||||||||||||||    
T  21099643 tcatcagaagatcagagacttaaagcttcaaagg 21099676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 21072027 - 21072091
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||  |||||||||  ||||| | | ||||||||| ||||||| ||||||||||||||||    
T  21072027 taggttctgaaagaacaaaaaagagctaaggaatcaacaaaaaggaagcttgaagcgtctgaaga 21072091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 22403951 - 22403979
Alignment:
Q  72 gaagcgtctgaagaaaagaggttctgaag 100  Q
    |||||||||||||||||||||||||||||    
T  22403951 gaagcgtctgaagaaaagaggttctgaag 22403979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11916104 - 11915989
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||| |||||| |||||||||||  ||||| |||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||    
T  11916104 ttagtgtctctttaaa-gcataggttctgaaagaaaaaatgagagcaatgaaatcaacaagaaggaagcttgaagcatccgaagaaaagaggttctgaag 11916006  T
Q  101 ttcaagtgctcctgaagt 118  Q
     | |||||||||||||||    
T  11916005 at-aagtgctcctgaagt 11915989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 17540788 - 17540704
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  17540788 aagcataggttctggaagaacaaatgagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaagaggttctgaag 17540704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 6642051 - 6641947
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    |||| ||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||| |||||||||| | | |||||||| |||||||||||||    
T  6642051 aaagtataggttctggaagaacaaatgagagcaatggagtcaacaagaaggaagcttgaagcatctgaagaaatgtgcttctgaag-tcaagtgctcctg 6641953  T
Q  115 aagtga 120  Q
    ||||||    
T  6641952 aagtga 6641947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 41114479 - 41114579
Alignment:
Q  1 ttagtgtct-ttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaa 99  Q
    ||||||||| |||| ||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||||||| | ||||||||||||||||||||    
T  41114479 ttagtgtctctttttaaagcttaggttctcgaagaacaaatgagagcaatggaatcaacgagaaggaagcttgaagcatatgaagaaaagaggttctgaa 41114578  T
Q  100 g 100  Q
    |    
T  41114579 g 41114579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 17787766 - 17787859
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttct 96  Q
    ||||||||| |||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||    
T  17787766 ttagtgtctctttaaa-gcacatgttct-gaagaacaaatgagagcaatgaaatcaacaagaaggaagcttgaagcatctgaagaaaagaggttct 17787859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 29680305 - 29680404
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||||||||||||| |||||||| | ||||||||| ||||||| ||||||  |||||||| ||| | | |||||||  |||||||||||||||||    
T  29680305 taggttctagaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttgaagtatctgaagagaagtgttcctgaagtcaaagtgctcctgaagtga 29680404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 22 - 120
Target Start/End: Complemental strand, 56034922 - 56034824
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||| |||||||||| ||||||||   ||||||||| ||| ||| |||||||||||||||||||| | | |||||||  ||||||| |||||||||    
T  56034922 aggttctggaagaacaaaagagagcaaatgaatcaacaaaaagaaagcttgaagcgtctgaagaaaagtgatcctgaagtaaaagtgcttctgaagtga 56034824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Original strand, 14604655 - 14604751
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||| |||||||||| |||||| | | ||||||||| ||||||| ||||| |||||||||| ||| | | |||||||  |||||||||||||||    
T  14604655 aggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaaacgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagt 14604751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 37435267 - 37435367
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| ||||||||   ||||||||| ||||||| ||||||| |||||||| ||| | | |||||||   |||||||||||||||    
T  37435267 ataggttctggaagaacaaaagagagcaaatgaatcaacaaaaaggaagcttgaagcatctgaagagaagtgctcctgaagtaatagtgctcctgaagtg 37435366  T
Q  120 a 120  Q
    |    
T  37435367 a 37435367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 119
Target Start/End: Complemental strand, 10073278 - 10073189
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  |||||||| | ||||||||| ||||||| || ||||||||||||||||| | | ||||||   ||||||||||||||||    
T  10073278 gaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaagtgctcctgaagacaaagtgctcctgaagtg 10073189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 3395990 - 3395926
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||| | ||||||||| ||||||| || |||||||||||||    
T  3395990 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 3395926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 19620839 - 19620938
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||||| | ||||||||| ||||||| || |||| |||||||| | | | | |||||||  ||||| |||||||||||    
T  19620839 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaagcatctgaagagacgtgctcctgaagtcaaagtgatcctgaagtga 19620938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 41114668 - 41114722
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||| ||||| |||||||||||||||| ||||||| || ||||||||||||||||    
T  41114668 tcatcaggagctgaagatcatcagaagctgagagaattgaagcttcaaaggttgt 41114722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 6641880 - 6641843
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||||||| |||||||||||||||||||    
T  6641880 tcatcagaagatgagagatttaaagcttcaaaggttgt 6641843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 11901585 - 11901528
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttga 73  Q
    ||||||||||||| ||||||||||||||| ||||| ||| ||||| ||||||| ||||    
T  11901585 aagcataggttctggaagaacaaatgagaacaatggaattaacaaaaaggaagcttga 11901528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 40846302 - 40846265
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaa 224  Q
    ||||| ||||||||||||||||||||||||||||||||    
T  40846302 tgaagttcatcagaagatgagagacttaaagcttcaaa 40846265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 10250191 - 10250157
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatg 50  Q
    |||||| ||||||||||||||||||||||||||||    
T  10250191 aagcatgggttctagaagaacaaatgagagcaatg 10250157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 13575900 - 13575989
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  ||||||||   ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  13575900 gaagaacaatagagagcaaatgaatcaacaaaaaggaagcttaaagcgtctgaagaaaactgctcctgaagacaaagtgctcctgaagtg 13575989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 15139424 - 15139387
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||| |||||||||| ||||||||||||    
T  15139424 tcatcagaagatgatagacttaaagattcaaaggttgt 15139387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 16853835 - 16853778
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaa 87  Q
    ||||||||| | ||||||| | ||||||||| ||||||| || |||||||||||||||    
T  16853835 gaagaacaattaagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaa 16853778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 40846448 - 40846379
Alignment:
Q  21 taggttctagaagaacaaat-gagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    ||||||||  |||||||||| |||||  ||| ||||||||| ||||||| ||||||| ||||||||||||    
T  40846448 taggttctgaaagaacaaattgagagttatggaatcaacaaaaaggaagcttgaagcatctgaagaaaag 40846379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Complemental strand, 54680241 - 54680164
Alignment:
Q  42 agagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| | ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  54680241 agagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaattgctcctgaagacaaagtgctcctgaagtg 54680164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 9141227 - 9141163
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||| | |||||||||| |||||||| | ||||||||| ||||||| || | |||||||||||    
T  9141227 taggttatggaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttaaggcgtctgaaga 9141163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 6379 - 6262
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||| | | ||||||    
T  6379 ttagtgtctatttaaa-gtataggttctagaagaacaaatgagagcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaagtgctcctgaag 6281  T
Q  101 ttcaagtgctcctgaagtga 120  Q
     ||||||| |||||||||||    
T  6280 -tcaagtgttcctgaagtga 6262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 6218 - 6177
Alignment:
Q  184 agttgaagatcatcagaagatgagagacttaaagcttcaaag 225  Q
    |||||||| |||||||||||||||||| ||||||||||||||    
T  6218 agttgaagttcatcagaagatgagagatttaaagcttcaaag 6177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 226
Target Start/End: Complemental strand, 159444 - 159224
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    |||| ||||||||| ||||||||||||||||||||| |||||||||||| |||| ||||||| ||||||| || | | |  ||| ||| | |||||||||    
T  159444 aaagtataggttctggaagaacaaatgagagcaatggaatcaacaagaaagaagcttgaagcatctgaaggaa-gtgctcatgatgttta-gtgctcctg 159347  T
Q  115 aagtga-----------gaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaaga 203  Q
    ||||||           |||  ||||||||||||| |||||| ||||||||||||| || |||| ||||||||||| || || |||||| ||||| ||||    
T  159346 aagtgatgacgtcatcagaagcaagttcatcagaagcacctcatcagaagcaacatcacaagaagcagtttttcatcagaagctgaagaccatcaaaaga 159247  T
Q  204 tgagagacttaaagcttcaaagg 226  Q
    ||||||||||| |||||||||||    
T  159246 tgagagacttagagcttcaaagg 159224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 17024691 - 17024790
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| ||||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||||||| ||||| ||||||| ||||||||    
T  17024691 ataggttctggaagaacaaatgagatcaatggaatcaacaagaaggaagcttgaagcatctgaagaaaagaggttctaaagtt-aagtgcttctgaagtg 17024789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 18896296 - 18896377
Alignment:
Q  19 cataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||||||  |||||| |||||||||||||||||||||||    
T  18896296 cataggttctggaagaacaaatgagagcaatggaatcaacaagaaggaagcatgaagcatctgaagaaaagaggttctgaag 18896377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 21191591 - 21191688
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||| |||||||||| ||||||| || ||||||||||||||||| ||||||| |||||||||||| | | |||||| |||||| ||||||||||||    
T  21191591 aggttctggaagaacaaacgagagcattggaatcaacaagaaggaagcttgaagcatctgaagaaaagtgctcctgaag-tcaagtcctcctgaagtga 21191688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 230
Target Start/End: Original strand, 12613505 - 12613731
Alignment:
Q  21 taggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| |||||| ||| | ||||| ||| ||||||||| ||||||| ||||||| ||||||||| || | ||||||||| |||||||||||||||||    
T  12613505 taggttctggaagaaaaaactaagagctatggaatcaacaaaaaggaagcttgaagcatctgaagaatagtgattctgaagt-caagtgctcctgaagtg 12613603  T
Q  120 -----------agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatca------gaag 202  Q
               ||||  |||||||| |||| |||||| ||||||||||||| || | || |  | |||||| || || ||||||||||||      ||||    
T  12613604 atgacgtcatcagaagcaagttcattagaaccacctcatcagaagcaacatcaccaaaagcgttctttcatcagaagctgaagatcatcacgagctgaag 12613703  T
Q  203 atgagagacttaaagcttcaaaggttgt 230  Q
    |||||||| |||||||||||||||||||    
T  12613704 atgagagatttaaagcttcaaaggttgt 12613731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 118
Target Start/End: Complemental strand, 22154245 - 22154147
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||||| |||||||||| ||||||||   ||||||||| || |||| |||||||||||||||| ||| | | |||||||   ||||||||||||||    
T  22154245 ataggttctggaagaacaaaagagagcaaatgaatcaacaaaaatgaagcttgaagcgtctgaagagaagtgctcctgaagtcacagtgctcctgaagt 22154147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 24227689 - 24227745
Alignment:
Q  11 tttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||    
T  24227689 tttaaaagcataggttct-gaagaacaaatgagagcaatggaatctacaaaaaggaag 24227745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 20954164 - 20954228
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||| |||||||||||| |||||||| | ||||||||| ||||||| ||||||| ||||||||    
T  20954164 taggttttagaagaacaaaagagagcaaaggaatcaacaaaaaggaagcttgaagcatctgaaga 20954228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 48704570 - 48704506
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||||||||||||||| || |||| ||||||| ||| ||||    
T  48704570 taggttctggaagaacaaaagagagcaatgaaatcaacaaaaatgaagcttgaagcatctaaaga 48704506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 20109680 - 20109732
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    ||||||||||||| ||||||||||||||| ||||| |||| |||| |||||||    
T  20109680 aagcataggttctggaagaacaaatgagaacaatggaatctacaaaaaggaag 20109732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 26701853 - 26701952
Alignment:
Q  21 taggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| |||||||||| | ||||| ||| ||||||||  | ||||| ||||||||| |||||||||| | | |||||| |||||||||| |||||||    
T  26701853 taggttctggaagaacaaattaagagctatggaatcaacataagggaagcttgaagcgtatgaagaaaagtgctcctgaag-tcaagtgctcatgaagtg 26701951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Original strand, 26702007 - 26702040
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaagg 226  Q
    ||||||||||||| ||||||||||||||||||||    
T  26702007 tcatcagaagatgggagacttaaagcttcaaagg 26702040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 230
Target Start/End: Complemental strand, 48704406 - 48704369
Alignment:
Q  193 tcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||||||||||||  |||||||||||||||||||||||    
T  48704406 tcatcagaagatgcaagacttaaagcttcaaaggttgt 48704369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 16870327 - 16870279
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||||  ||||||||||||||||||||||||  |||| |||||||    
T  16870327 ataggttctgaaagaacaaatgagagcaatgaaatttacaacaaggaag 16870279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 223
Target Start/End: Original strand, 17024837 - 17024873
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaa 223  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  17024837 tgaagatcatcagaagctgagagaattaaagcttcaa 17024873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 19717875 - 19717811
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| ||| |||| | |||||| || ||||||| || |||||||||||||    
T  19717875 taggttctggaagaacaaaagagggcaaaggaatcaataaaaaggaagcttaaagcgtctgaaga 19717811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 38282953 - 38282889
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||||||||||||||  |||||||   |||||| || ||||||| || |||||||||||||    
T  38282953 taggttctagaagaacaaaatagagcaaatgaatcaataaaaaggaagcttaaagcgtctgaaga 38282889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 1239 - 1342
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    ||||| |||||||| |||||||||||||||||||   ||||||||||||||||| ||||||| |||||||||||||||||||||||  |||||||||||     
T  1239 aaagcttaggttctggaagaacaaatgagagcaacataatcaacaagaaggaagcttgaagcatctgaagaaaagaggttctgaag-acaagtgctcctt 1337  T
Q  115 aagtg 119  Q
    |||||    
T  1338 aagtg 1342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 1413 - 1467
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    |||| ||||| |||||||||||||||| ||||||| || ||||||||||||||||    
T  1413 tcatcaggagctgaagatcatcagaagctgagagaattgaagcttcaaaggttgt 1467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 22461399 - 22461497
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||| |||||| |||||||||||  ||||||||| |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||| |||||    
T  22461399 ttagtgtctctttaaa-gcataggttctgtaagaacaaaagagagcaatggaatcaacaagaaggaagcttgaaacgtctgaagaaaagaggttttgaag 22461497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 19956129 - 19956238
Alignment:
Q  11 tttaaaagcataggttctagaagaacaaatgagagcaat-gaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgc 109  Q
    ||||||||| || ||||| |||||||||||||||||||| | ||||||||||||||||  |||||||||||||| |||||| |||||||||  |||||||    
T  19956129 tttaaaagcttaagttctggaagaacaaatgagagcaattggaatcaacaagaaggaaacttgaagcgtctgaaaaaaagatgttctgaag-acaagtgc 19956227  T
Q  110 tcctgaagtga 120  Q
    |||||||||||    
T  19956228 tcctgaagtga 19956238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 19707871 - 19707767
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctg 114  Q
    |||| ||||||| | |||||||||||||| |||||| ||||||||| ||||||| ||||||  |||||||||||| | | |||||||| |||||||||||    
T  19707871 aaagtataggttatggaagaacaaatgagggcaatggaatcaacaaaaaggaagcttgaagaatctgaagaaaagtgctcctgaagtt-aagtgctcctg 19707773  T
Q  115 aagtga 120  Q
    ||||||    
T  19707772 aagtga 19707767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 19156545 - 19156446
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||||||||||||| |||||||| |  |||||||| ||||||| || ||||||||||||| ||| | | |||||||  |||||||||||||||||    
T  19156545 taggttctagaagaacaaaagagagcaaagggatcaacaaaaaggaagcttaaagcgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagtga 19156446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 20382184 - 20382283
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||  ||||||||| ||||| |||| ||||||||| ||||||| |||||||||||||||| ||| | | |||||||  |||||||||||||||||    
T  20382184 taggttctgaaagaacaaaagagagtaatggaatcaacaaaaaggaagcttgaagcgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagtga 20382283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 17441610 - 17441710
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| |||||||| | ||||||| | ||||||| || ||||||||||||| ||| | | |||||||  ||||||||||||||||    
T  17441610 ataggttctggaagaacaaaagagagcaaaggaatcaacgaaaaggaagcttaaagcgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagtg 17441709  T
Q  120 a 120  Q
    |    
T  17441710 a 17441710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 602523 - 602621
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||||||||||||||| |||| ||| | | |||||| || ||||||||||||||||    
T  602523 taggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagtttgaagcgtctaaagagaagcgttgctgaag-tctagtgctcctgaagtga 602621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 20255356 - 20255455
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    |||||||| ||| |||||| |||||||| | ||||||||| |||||||||| ||||||||||||| ||  | | |||||||  |||||||||||||||||    
T  20255356 taggttctggaacaacaaaagagagcaaaggaatcaacaaaaaggaagtttaaagcgtctgaagagaactgctcctgaagtcaaagtgctcctgaagtga 20255455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 30 - 100
Target Start/End: Complemental strand, 18772982 - 18772912
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||||||||||||||| |||| |||| ||||||  ||||||| | |||||||||||||||||||||    
T  18772982 gaagaacaaatgagagcaatggaatctacaaaaaggaaacttgaagcatttgaagaaaagaggttctgaag 18772912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 187 - 230
Target Start/End: Complemental strand, 17701946 - 17701903
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  17701946 tgaagttcatcagaagatgagagacttaaagcttcaaaggttgt 17701903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 85
Target Start/End: Complemental strand, 16189363 - 16189298
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||| |||||||||| ||||||||   ||||||||| ||||||| ||||||||||||||||    
T  16189363 ataggttctggaagaacaaaagagagcaaatgaatcaacaaaaaggaagcttgaagcgtctgaaga 16189298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 68
Target Start/End: Complemental strand, 23772739 - 23772683
Alignment:
Q  11 tttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaag 68  Q
    |||||||||||||||||| ||||||||||||||||||||| |||| |||| |||||||    
T  23772739 tttaaaagcataggttct-gaagaacaaatgagagcaatggaatctacaaaaaggaag 23772683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 18722419 - 18722634
Alignment:
Q  21 taggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||| |||||||||| | ||||||||| ||||||||| ||| ||| ||||||||| |||||||||| | || ||||| |||||| ||| |||| ||    
T  18722419 taggttctggaagaacaaattaagagcaatggaatcaacaaaaagaaagcttgaagcgtatgaagaaaagtgattatgaag-tcaagttctcatgaaatg 18722517  T
Q  120 -----------agaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgaga 208  Q
               ||||  ||||| ||||||| ||| || |||||||| ||||  | |||| | || |||||| |||||  ||||||||||||||||||| |    
T  18722518 atcacgtcattagaagcaagttgatcagaagcacttcatcagaagctacatccccagaagctgtctttcatcaggagcagaagatcatcagaagatgaaa 18722617  T
Q  209 gacttaaagcttcaaag 225  Q
    || |||| |||||||||    
T  18722618 gagttaatgcttcaaag 18722634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 120
Target Start/End: Original strand, 17525528 - 17525616
Alignment:
Q  31 aagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||| |||||||| ||||||||||| || |||| ||||||| |||||| | ||| | | ||||||  ||||||||||||||||||    
T  17525528 aagaacaaaagagagcaaagaaatcaacaaaaatgaagattgaagcatctgaaaagaagtgctcctgaag-acaagtgctcctgaagtga 17525616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 19943601 - 19943501
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaa-caagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    |||||||||||||||||||| ||||| |||| |||||| ||| || |||| ||||||| |||||||| ||| | | |||||| |  ||||||||||||||    
T  19943601 ataggttctagaagaacaaaagagagtaatggaatcaaccaaaaaagaagcttgaagcatctgaagagaagtgctcctgaag-tatagtgctcctgaagt 19943503  T
Q  119 ga 120  Q
    ||    
T  19943502 ga 19943501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 18120911 - 18121011
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| ||||||||   ||||||||| ||||||| || |||||| |||||| ||  | | ||||||   ||||||||||||||||    
T  18120911 ataggttctggaagaacaaaagagagcaaatgaatcaacaaaaaggaagcttaaagcgtttgaagagaactgctcctgaagacaaagtgctcctgaagtg 18121010  T
Q  120 a 120  Q
    |    
T  18121011 a 18121011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 225
Target Start/End: Original strand, 18730766 - 18730979
Alignment:
Q  23 ggttctagaagaacaaatga-gagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga- 120  Q
    |||||| ||||||||||| | |||||||| ||||||||| ||| ||| ||||||||| |||||||||| | || |||||| ||||| ||| |||| |||     
T  18730766 ggttctggaagaacaaattaagagcaatggaatcaacaaaaagaaagcttgaagcgtatgaagaaaagtgattatgaagt-caagttctcatgaaatgat 18730864  T
Q  121 ----------gaaataagttcatcagaaacacctcgtcagaagcaacataactagaaacagtttttcattaggagttgaagatcatcagaagatgagaga 210  Q
              |||  ||||| ||||||| ||| || |||||||| ||||  | |||| | || |||||| |||||  ||||||||||||||||||| |||    
T  18730865 gacgtcatcagaagcaagttgatcagaagcacttcatcagaagctacatccccagaagctgtctttcatcaggagcagaagatcatcagaagatgaaaga 18730964  T
Q  211 cttaaagcttcaaag 225  Q
     |||| |||||||||    
T  18730965 gttaatgcttcaaag 18730979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 19707706 - 19707667
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||||||||||||||||||| ||| |||||||||||||||    
T  19707706 tgaagatcatcagaagatgaaagaattaaagcttcaaagg 19707667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 21933263 - 21933200
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||||||| || |||||||||||||    
T  21933263 aggttctggaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 21933200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 26833416 - 26833322
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttg----------aagcgtctgaagaaaagaggttctgaag 100  Q
    ||||||||||||| ||||||||||||||||||||  |||| |||| ||||| | |||          ||||||||||||||||||||||||||||    
T  26833416 aagcataggttctggaagaacaaatgagagcaatagaatctacaaaaaggaggcttgtgttgcaagaaagcgtctgaagaaaagaggttctgaag 26833322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Original strand, 23263389 - 23263427
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaa 60  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  23263389 aggttctcgaagaacaaaagagagcaatgaaatcaacaa 23263427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 29693680 - 29693616
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||| ||||||||||||| |||||||  | ||||||||| ||||||| || |||| ||||||||    
T  29693680 taggtcctagaagaacaaaagagagcagaggaatcaacaaaaaggaagcttaaagcatctgaaga 29693616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 120
Target Start/End: Original strand, 4688 - 4786
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||| |||||||||| |||||||| | ||||||||| ||||||||||||||| |||||||| ||| | | |||||||  |||||||||||||||||    
T  4688 aggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagtttgaagcatctgaagagaagtgctcctgaagtcaaagtgctcctgaagtga 4786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 20710 - 20810
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||||| |||||||||| |||||| | | ||||||||| |||||||||||||||||||||||| ||| | | |||||||   |||||||||||||||    
T  20710 ataggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagtttgaagcgtctgaagagaagtgctcctgaagtaatagtgctcctgaagtg 20809  T
Q  120 a 120  Q
    |    
T  20810 a 20810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 145253 - 145160
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttct 96  Q
    ||||||||| |||||| ||| | ||||| ||||||||||||||| |||||||||| ||||||| |||| ||||||| |||||||||||||||||||    
T  145253 ttagtgtctctttaaa-gcacatgttct-gaagaacaaatgagaacaatgaaatctacaagaaagaagcttgaagcatctgaagaaaagaggttct 145160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 96
Target Start/End: Complemental strand, 8218 - 8119
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatca----acaagaaggaagtttgaagcgtctgaagaaaagaggttct 96  Q
    ||||||||| ||| |||||| | ||||| ||||||||||||||||||||| |||||    |||||||| ||| ||||||| |||||||||||||||||||    
T  8218 ttagtgtctcttttaaagcacatgttctggaagaacaaatgagagcaatggaatcaacgtacaagaagtaagcttgaagcatctgaagaaaagaggttct 8119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0273; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 5845 - 5795
Alignment:
Q  176 tcattaggagttgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    |||| |||||||||||||||||||||| ||| ||| || ||||||||||||    
T  5845 tcatcaggagttgaagatcatcagaagctgaaagaattgaagcttcaaagg 5795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0334 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: scaffold0334
Description:

Target: scaffold0334; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 20 - 120
Target Start/End: Complemental strand, 10165 - 10065
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  ||||||||| ||||| |||| ||||||||| ||||||| ||||||| |||||||| ||  | |||||||||  ||||||||||||||||    
T  10165 ataggttctgaaagaacaaaagagaggaatggaatcaacaaaaaggaagcttgaagcatctgaagagaaatgcttctgaagtcaaagtgctcctgaagtg 10066  T
Q  120 a 120  Q
    |    
T  10065 a 10065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 35903 - 35990
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    ||||||||| | | ||| |||||||||| ||||||||||||||||||||  ||||||||||| ||||||||||||  | |||||||||    
T  35903 ttagtgtctctattaaaccataggttctggaagaacaaatgagagcaatagaatcaacaagatggaagtttgaaggatttgaagaaaa 35990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 89
Target Start/End: Complemental strand, 74940 - 74866
Alignment:
Q  15 aaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||| ||||||||| |||||||||| ||||||| || ||||||||||||| ||| ||||||| ||||||||||||    
T  74940 aaagtataggttctggaagaacaaacgagagcagtggaatcaacaagaagaaaggttgaagcatctgaagaaaag 74866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 5694 - 5762
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||||| |||||||||| |||||| | | ||||||||| ||||||||||||||| ||||||||||||    
T  5694 taggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagtttgaagcatctgaagaaaag 5762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0171 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 27184 - 27284
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  || |||||| |||||||| | ||||||||| ||||||| ||||||| |||||||| ||| | ||||||||   ||||||||||||||||    
T  27184 ataggttctgaaataacaaaagagagcaaaggaatcaacaaaaaggaagcttgaagcatctgaagagaagtgcttctgaaggcaaagtgctcctgaagtg 27283  T
Q  120 a 120  Q
    |    
T  27284 a 27284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 32843 - 32743
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaag-ttcaagtgctcctgaagtg 119  Q
    ||||||||||||||||||| ||||| || | ||||||||| ||||||| || | ||||||||||||||| | ||||||||    ||||||||||||||||    
T  32843 taggttctagaagaacaaaagagagtaaaggaatcaacaaaaaggaagcttaaggcgtctgaagaaaagtgcttctgaagacaaaagtgctcctgaagtg 32744  T
Q  120 a 120  Q
    |    
T  32743 a 32743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 10258 - 10171
Alignment:
Q  1 ttagtgtctttttaaaagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    ||||||||| |||||| | |||| |||| ||||||| ||||||||||||  ||||||||||||||||| ||||||| |||||| |||||    
T  10258 ttagtgtctatttaaa-gtatagattctggaagaacgaatgagagcaattgaatcaacaagaaggaagcttgaagcatctgaataaaag 10171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Complemental strand, 10111 - 10072
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaagg 226  Q
    ||||| |||||||||||||||| |||||||||||||||||    
T  10111 tgaagttcatcagaagatgagaaacttaaagcttcaaagg 10072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 212723 - 212627
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||| |||||||||| |||||| | | ||||||||| ||||||| ||||| |||||||||| ||| | | |||||||  |||||||||||||||    
T  212723 aggttctggaagaacaaaagagagctaaggaatcaacaaaaaggaagcttgaaacgtctgaagagaagtgctcctgaagtcaaagtgctcctgaagt 212627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0916 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 2381 - 2438
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttga 73  Q
    ||||||||||||| |||||||||||||||||||||||||| |||| ||| ||| ||||    
T  2381 aagcataggttctggaagaacaaatgagagcaatgaaatctacaaaaagtaagcttga 2438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0359 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 5430 - 5531
Alignment:
Q  20 ataggttctagaagaacaaa-tgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||||| |||||||||| |||||||||   ||||||| | ||||||  |||||||||||||||| ||| | | |||||||  |||||||||||||||    
T  5430 ataggttctggaagaacaaaatgagagcaaatgaatcaactaaaaggaaccttgaagcgtctgaagagaagtgctcctgaagtaaaagtgctcctgaagt 5529  T
Q  119 ga 120  Q
    ||    
T  5530 ga 5531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 151775 - 151816
Alignment:
Q  189 aagatcatcagaagatgagagacttaaagcttcaaaggttgt 230  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  151775 aagatcaccagaagatgagagacttaaagcttcaaaggttgt 151816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 8267 - 8203
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||| | ||||||||| ||| ||| || | |||||||||||    
T  8267 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaagtaagcttaaggcgtctgaaga 8203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 85
Target Start/End: Complemental strand, 60386 - 60322
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||| | ||||||||| || |||| || | |||||||||||    
T  60386 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaatgaagcttaaggcgtctgaaga 60322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0243 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0243
Description:

Target: scaffold0243; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 4750 - 4814
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    ||||||||||||||||||| | |||||| | ||||||||| ||||||| || |||||||||||||    
T  4750 taggttctagaagaacaaaagggagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaaga 4814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 15456 - 15358
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||||||  ||||||||| |||||| | | ||||||||| ||||||| || ||||||||||||| ||| | | |||||| ||||||||| |||||||||    
T  15456 taggttctttaagaacaaaagagagctaaggaatcaacaaaaaggaagcttaaagcgtctgaagagaagtgctcctgaag-tcaagtgcttctgaagtga 15358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 118
Target Start/End: Original strand, 9116 - 9213
Alignment:
Q  20 ataggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagt 118  Q
    ||||||||| |||||||||| ||||||||   ||||||||| ||||||| |||||||||||||||| ||| | | |||||||   ||||||| ||||||    
T  9116 ataggttctggaagaacaaaagagagcaaatgaatcaacaa-aaggaagcttgaagcgtctgaagagaagtgatcctgaagtcacagtgctcttgaagt 9213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0066 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0066
Description:

Target: scaffold0066; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 60656 - 60724
Alignment:
Q  52 aatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtgag 121  Q
    ||||||||| ||||||| |||||||||||||||| ||| | | ||||||||  |||||||||||||||||    
T  60656 aatcaacaaaaaggaagcttgaagcgtctgaagagaagtgctcctgaagtt-tagtgctcctgaagtgag 60724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 89820 - 89909
Alignment:
Q  30 gaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||||||  |||||||| | ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  89820 gaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaattgttcctgaagacaaagtgctcctgaagtg 89909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 1095 - 1045
Alignment:
Q  16 aagcataggttctagaagaacaaatgagagcaatgaaatcaacaagaagga 66  Q
    ||||||||||||| ||||||||||| ||||||||| |||| |||| |||||    
T  1095 aagcataggttctggaagaacaaataagagcaatgtaatctacaaaaagga 1045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 9880 - 9975
Alignment:
Q  24 gttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtga 120  Q
    ||||| |||||||||| |||||||||| ||||||||| ||||||| ||||||  | |||||| ||| | | |||||||  | |||||||||||||||    
T  9880 gttctggaagaacaaaagagagcaatggaatcaacaaaaaggaagcttgaagaatatgaagagaagtgctcctgaagtata-gtgctcctgaagtga 9975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 85
Target Start/End: Original strand, 25732 - 25796
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaaga 85  Q
    |||||||| |||||||||| |||||||| | ||||||||| ||||||| || | |||||||||||    
T  25732 taggttctggaagaacaaaagagagcaaaggaatcaacaaaaaggaagattaaggcgtctgaaga 25796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 120
Target Start/End: Original strand, 19214 - 19313
Alignment:
Q  21 taggttctagaagaacaaatgagagcaatgaaatcaacaagaa-ggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    |||||| | |||||||||| |||||| | | | ||||||| || ||||| |||||||||||||||| ||| | | |||||| ||||||||||||||||||    
T  19214 taggttatggaagaacaaaagagagctaaggagtcaacaaaaaaggaagcttgaagcgtctgaagagaagtgctcctgaag-tcaagtgctcctgaagtg 19312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 8059 - 7993
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||| ||| || ||||||||||||||||    
T  8059 aggttctggaagaacaatagagagcaaaggaatcaacaaaaagaaagcttaaagcgtctgaagaaaa 7993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0217 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 19404 - 19338
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    ||||||| |||||||||  |||||||| | ||||||||| ||||||| || |||| |||||||||||    
T  19404 aggttctggaagaacaatagagagcaaaggaatcaacaaaaaggaagcttaaagcatctgaagaaaa 19338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Complemental strand, 143460 - 143394
Alignment:
Q  22 aggttctagaagaacaaatgagagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaa 88  Q
    ||||||| |||||||||  |||||||| | |||||| || ||||||| || ||||||||||||||||    
T  143460 aggttctggaagaacaatagagagcaaaggaatcaagaaaaaggaagcttaaagcgtctgaagaaaa 143394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1359 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1359
Description:

Target: scaffold1359; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 119
Target Start/End: Original strand, 449 - 526
Alignment:
Q  42 agagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaagaggttctgaagttcaagtgctcctgaagtg 119  Q
    ||||||| | ||||||||| ||||||| || ||||||||||||||||  | | ||||||   ||||||||||||||||    
T  449 agagcaaaggaatcaacaaaaaggaagcttaaagcgtctgaagaaaactgctcctgaagacaaagtgctcctgaagtg 526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: scaffold0324
Description:

Target: scaffold0324; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 10165 - 10128
Alignment:
Q  187 tgaagatcatcagaagatgagagacttaaagcttcaaa 224  Q
    ||||| |||||||||||| |||||||||||||||||||    
T  10165 tgaagttcatcagaagataagagacttaaagcttcaaa 10128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0324; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 21 - 89
Target Start/End: Complemental strand, 10309 - 10240
Alignment:
Q  21 taggttctagaagaacaaatga-gagcaatgaaatcaacaagaaggaagtttgaagcgtctgaagaaaag 89  Q
    |||||||| |||||| |||| | |||| ||| ||| ||||| ||||||| ||||||||||||||||||||    
T  10309 taggttctggaagaaaaaattaagagctatggaataaacaaaaaggaagcttgaagcgtctgaagaaaag 10240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University