View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_34 (Length: 227)
Name: NF10349_low_34
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 5656970 - 5657186
Alignment:
| Q |
1 |
agatggaaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactata |
100 |
Q |
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| T |
5656970 |
agatggaaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactata |
5657069 |
T |
|
| Q |
101 |
ttatctgaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggac |
200 |
Q |
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| T |
5657070 |
ttatctgaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaacaaaataaacatagaaaactggac |
5657169 |
T |
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| Q |
201 |
aataaaatccgcctttg |
217 |
Q |
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||||||||||||||||| |
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| T |
5657170 |
aataaaatccgcctttg |
5657186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5718712 - 5718884
Alignment:
| Q |
1 |
agatggaaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactata |
100 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
5718712 |
agatggaaaaccgccaaggtaaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaaggcataactata |
5718808 |
T |
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| Q |
101 |
ttatctgaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
176 |
Q |
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|||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5718809 |
ttatatgaacttcaattatgaatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5718884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 5686571 - 5686742
Alignment:
| Q |
1 |
agatggaaaactgccatggtaaatttgacatgctctgctaacttttgaggaacaaaagtagcagctaataaaacactttttgctgcaaggcataactata |
100 |
Q |
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||||||||||| |||| ||||||||||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||||| |||||||||| |
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| T |
5686571 |
agatggaaaaccgccaaggtaaatttgacatgttctgctaacttttgaggatcaaaagtagcagctaa---aacactttctgctgcaag-cataactata |
5686666 |
T |
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| Q |
101 |
ttatctgaacttcgattatgaatcactaattactttatttttaagttcttgaaatcatttttaaatgagtttttaa |
176 |
Q |
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|||| |||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5686667 |
ttatatgaacttcaattatgaatcactaattactttctttttaagttcttgaaatcatttttaaatgagtttttaa |
5686742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 174
Target Start/End: Complemental strand, 17036469 - 17036439
Alignment:
| Q |
144 |
agttcttgaaatcatttttaaatgagttttt |
174 |
Q |
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| T |
17036469 |
agttcttgaaatcatttttaaatgagttttt |
17036439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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