View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_35 (Length: 227)
Name: NF10349_low_35
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 41307442 - 41307647
Alignment:
| Q |
1 |
gtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaacatttttagtccgtctatg |
100 |
Q |
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| T |
41307442 |
gtttctgtagcattatatggttctcctcttgttgcaatggtgagtcactcatttttccttccattcataattttacattaacatttttagtctgtctatg |
41307541 |
T |
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| Q |
101 |
tttgatatcataccgtgactctggcacgctaacggtgatatcaaacatagactaacaatcgccaacaacaaaagcatcatgttgtaaacttgtaattaga |
200 |
Q |
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| T |
41307542 |
tttgatatcataccgtgattctggcacgctcacggtgatatcaaacatagattaacaatcgtcaacaacaaaagcatgatgttgtaaacttgtaattaga |
41307641 |
T |
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| Q |
201 |
tggtaa |
206 |
Q |
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|||||| |
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| T |
41307642 |
tggtaa |
41307647 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41297625 - 41297671
Alignment:
| Q |
1 |
gtttctgtagcattatatggttctcctcttgttgcaatggtgagtca |
47 |
Q |
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|||||||| ||||| |||||||||||||||||||||||||||||||| |
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| T |
41297625 |
gtttctgttgcattgtatggttctcctcttgttgcaatggtgagtca |
41297671 |
T |
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