View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_38 (Length: 203)
Name: NF10349_low_38
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_38 |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-100; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 4 - 203
Target Start/End: Complemental strand, 48952302 - 48952103
Alignment:
| Q |
4 |
tatgtgacatagcttctctctttgcttcacgtggccactttgttacaatcataaccactcattcaaatgctaaaatccttcccaaatctaacaacaactt |
103 |
Q |
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| T |
48952302 |
tatgtgacatagcttctctctttgcttcacgtggtcactttgttacaatcataaccactcattcaaatgctaaaatccttcccaaatctaacaacaactt |
48952203 |
T |
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| Q |
104 |
caacgttcaaacctttcaattcccttcccaagaagttggcctcccggatggcatcgaaaacctctcctccgtcagtaccatcgatgaaggctggaaaatc |
203 |
Q |
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| T |
48952202 |
caactttcaaacctttcaattcccttcccaagaagttggcctccccgatggcatcgaaaacctctcttccgtcagtaccatcgatgaaggctggaaaatc |
48952103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 107; Significance: 8e-54; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 573 - 746
Alignment:
| Q |
1 |
ctctatgtgacatagcttctctctttgcttcacgtggccactttgttacaatcataaccactcattcaaatgctaaaatccttcccaaatctaacaacaa |
100 |
Q |
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|||| |||||||| || ||||||||||||||||||||||||||||||| |||||| ||||||| |||||| ||| ||||||| |||||||| |||||| |
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| T |
573 |
ctctttgtgacattgcctctctctttgcttcacgtggccactttgttaaaatcatcaccactccttcaaacgctcaaatcctacccaaatc---caacaa |
669 |
T |
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| Q |
101 |
cttcaacgttcaaacctttcaattcccttcccaagaagttggcctcccggatggcatcgaaaacctctcctccgtca |
177 |
Q |
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| T |
670 |
cttcaacgttcacacctttcaattcccttcccaagaagttggcctcccggacggcattgaaaacctgtcctctgtca |
746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 5730 - 5791
Alignment:
| Q |
109 |
ttcaaacctttcaattcccttcccaagaagttggcctcccggatggcatcgaaaacctctcc |
170 |
Q |
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| T |
5730 |
ttcacaccgttccatttccttcccatgaagttggcctccctgatggcgtcgaaagcctctcc |
5791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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