View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_5 (Length: 463)
Name: NF10349_low_5
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 18 - 283
Target Start/End: Original strand, 48888102 - 48888367
Alignment:
| Q |
18 |
ataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggtcacaagggcagcatatatgcagttagttggag |
117 |
Q |
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| T |
48888102 |
ataggaagggtattatatatgatggaaagactgggagtaaacttggagagttttctgaagaggacggtcacaagggcagcatatatgcagttagttggag |
48888201 |
T |
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| Q |
118 |
tcctgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgataaaaatttcgtcttttttcttttggccagaat |
217 |
Q |
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| T |
48888202 |
tcgtgacagtaaacaggtgaactccaggttgtgtttgaatgttactgttttattatgttgacattgataaaaatttcgtcttttttcttttggccagaat |
48888301 |
T |
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| Q |
218 |
tgtatataagattgcaatgtgaaatcgattctgtactggtttaacattcttgagagcttaatcacc |
283 |
Q |
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| T |
48888302 |
tgtatataagattgcaatgtgaaatcgattctgtactggtttaacattgttgagagcttaatcacc |
48888367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 342 - 453
Target Start/End: Original strand, 48888425 - 48888536
Alignment:
| Q |
342 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtgctgctatttacattctagtttaaattaagtnnnnnnnnttacaggttctt |
441 |
Q |
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| T |
48888425 |
taaggaggaacatgttatgaatttatttgtgctattttagatgttcagtactgctatttacattctagtttaaattaagtaaaaaaaattacaggttctt |
48888524 |
T |
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| Q |
442 |
actgtctctgct |
453 |
Q |
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| T |
48888525 |
actgtctctgct |
48888536 |
T |
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