View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_7 (Length: 445)
Name: NF10349_low_7
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 28102899 - 28102663
Alignment:
| Q |
5 |
gagaagcagagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaatac |
104 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28102899 |
gagaagcacaaaactacaaaaacaaagtgatagccaaaagaaggggccacagccgcgccttccaaaacccaaacacaatgacaacaatgccacaaaatac |
28102800 |
T |
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| Q |
105 |
cttcctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggtt |
204 |
Q |
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||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102799 |
cttcctgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggtt |
28102700 |
T |
|
| Q |
205 |
tacctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||| |
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| T |
28102699 |
tacctgacattagtttagagaagagagtgctaagagg |
28102663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 31711786 - 31712021
Alignment:
| Q |
6 |
agaagcagagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaatacc |
105 |
Q |
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||||||| | |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31711786 |
agaagcacaaaactacaaaaacaaagtgatagccaaaagaaggggccacaaccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaataca |
31711885 |
T |
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| Q |
106 |
ttcctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggttt |
205 |
Q |
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||| |||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
31711886 |
ttcatgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcggaggtttaattaaagttgttggtttatgggttt |
31711985 |
T |
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| Q |
206 |
acctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
31711986 |
acctgacattagtttagagaagagagtgctgagagg |
31712021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 287 - 429
Target Start/End: Complemental strand, 28102618 - 28102473
Alignment:
| Q |
287 |
gggtaatgatgaaaggagtctgaaggtgaaattcaatttgggagaattgaaaggatgt---gtgagaagggtttaatttatgttgtttgtttttctgacc |
383 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |
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| T |
28102618 |
gggtaaggatgaaaggagtctgaaggtgaaattcaatttgggggaattgaaaggatgttgcgtgagaagggtttaatttatgttgtttgtttttctaacc |
28102519 |
T |
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| Q |
384 |
atgaagaaatcgttgatgttgttgttggaatggaagatgaatttta |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28102518 |
atgaagaaatcgttgatgttgttgttggaatggaagatgaatttta |
28102473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 287 - 429
Target Start/End: Original strand, 31712067 - 31712212
Alignment:
| Q |
287 |
gggtaatgatgaaaggagtctgaaggtgaaattcaatttgggagaattgaaaggatgt---gtgagaagggtttaatttatgttgtttgtttttctgacc |
383 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
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| T |
31712067 |
gggtaaggatgaaaggagtttgaaggtgaaattcaatttgggagaattgaaaggatgttgtgtgagaagagtttaatttatgttgtttgtttttctgacc |
31712166 |
T |
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| Q |
384 |
atgaagaaatcgttgatgttgttgttggaatggaagatgaatttta |
429 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31712167 |
atgaagaaatcgttgacgttgttgttggaatggaagatgaatttta |
31712212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 367 - 428
Target Start/End: Original strand, 52659861 - 52659922
Alignment:
| Q |
367 |
tgtttgtttttctgaccatgaagaaatcgttgatgttgttgttggaatggaagatgaatttt |
428 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52659861 |
tgtttgtttttctgaccatgaagaaatcgttgatgttgttgttggaatggaagatgaatttt |
52659922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 52659589 - 52659640
Alignment:
| Q |
190 |
gttggtttctgggtttacctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52659589 |
gttggtttatgggtttacctgacattagtttagagaagagagtgctgagagg |
52659640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 5 - 241
Target Start/End: Complemental strand, 7037761 - 7037525
Alignment:
| Q |
5 |
gagaagcagagaactacaaaaacaaagtgatagccaaaagaaggggccacatccgcgccttccaaaacccaaacacagtgacaacaatgccacaaaatac |
104 |
Q |
| |
|
|||||||| | |||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7037761 |
gagaagcacaaaactacaaaaacaaagtgatagtcaaaagaaggggccacagccgcgccttccaaaacccaaacgcagtgacaacaatgccacaaaatac |
7037662 |
T |
|
| Q |
105 |
cttcctgtcacaccataacagaccacccccaagaaatggtcatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggtt |
204 |
Q |
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|||| |||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7037661 |
cttcatgtcacaccataacagaccacccccaagcaatagccatcacctccgttccgtgcactctctcgggggtttaattaaagttgttggtttctgggtt |
7037562 |
T |
|
| Q |
205 |
tacctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
7037561 |
tacctgacattagtttagagaagagagtgctgagagg |
7037525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 323 - 429
Target Start/End: Complemental strand, 7037483 - 7037374
Alignment:
| Q |
323 |
tttgggagaattgaaaggatgt---gtgagaagggtttaatttatgttgtttgtttttctgaccatgaagaaatcgttgatgttgttgttggaatggaag |
419 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7037483 |
tttgggagaattgaaagaatgttgtgtgagaagggtttaatttatgttgtttgtttttctgaccatgaagaaatcgttgacgttgttgttggaatggaag |
7037384 |
T |
|
| Q |
420 |
atgaatttta |
429 |
Q |
| |
|
|||||||||| |
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|
| T |
7037383 |
atgaatttta |
7037374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 413
Target Start/End: Complemental strand, 26388636 - 26388602
Alignment:
| Q |
379 |
tgaccatgaagaaatcgttgatgttgttgttggaa |
413 |
Q |
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||||||||||||||| ||||||||||||||||||| |
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| T |
26388636 |
tgaccatgaagaaattgttgatgttgttgttggaa |
26388602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 241
Target Start/End: Original strand, 31567638 - 31567676
Alignment:
| Q |
203 |
tttacctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||| |
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| T |
31567638 |
tttacctgacattagttcggagaagagagtgctgagagg |
31567676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 51400695 - 51400620
Alignment:
| Q |
351 |
agggtttaatttatgttgtttgtttttctgaccatgaagaaatcgttgatgttgttgttggaatggaagatgaatt |
426 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
51400695 |
agggtttaatttatgttgtttgtttttctgaccatgaagaaatcgttgatgttgttattggaatggaagatgaatt |
51400620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 187 - 241
Target Start/End: Complemental strand, 51400953 - 51400899
Alignment:
| Q |
187 |
gttgttggtttctgggtttacctgacattagtttagagaagagagtgctgagagg |
241 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51400953 |
gttgttggtttcttggtttacctgacattagtttagagaagagagtgctgagagg |
51400899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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