View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10349_low_8 (Length: 425)
Name: NF10349_low_8
Description: NF10349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10349_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 18 - 412
Target Start/End: Original strand, 31821843 - 31822240
Alignment:
| Q |
18 |
cttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaa |
117 |
Q |
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| T |
31821843 |
cttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgttattcctcaaagcaaaa |
31821942 |
T |
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| Q |
118 |
agagcttgaacaaaactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgc |
217 |
Q |
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| T |
31821943 |
agagcttgaacaaaactggttctctctctattttcagaattgaggtttgtcttctttaactttttctctttgtggtcaaaagtagggaatatattgatgc |
31822042 |
T |
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| Q |
218 |
catcataatgattaatcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaac |
317 |
Q |
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| T |
31822043 |
caacataatgattaatcacaagtataattctagcctaataaaatgttcctcatgattaatgatgacacactaaggttaaaaaagaatgaaaatacaaaac |
31822142 |
T |
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| Q |
318 |
ctgatcagtgttgctattagaccacaattgatggactgattgatgattatt---tgtttgtttgatctataaagcacttttgaaaaaccgaacttcat |
412 |
Q |
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| T |
31822143 |
ctgatcagtgttgctattagaccacaattgatggactgattgatgattatttcatgtttgtttgatctataaagcccttttgaaaaaccgaacttcat |
31822240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 35688748 - 35688829
Alignment:
| Q |
19 |
ttagagggaagaggcttatgtttgttggagactcattgaataggaaccaatgggaatcaatgatttgtttggttcaatctgt |
100 |
Q |
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| T |
35688748 |
ttagagggaagaggttaatgtttgttggagactctttgaatagaaaccagtgggaatcaatggtttgtatggttcaatctgt |
35688829 |
T |
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