View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1034_low_1 (Length: 511)
Name: NF1034_low_1
Description: NF1034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1034_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 327 - 473
Target Start/End: Complemental strand, 48737085 - 48736939
Alignment:
| Q |
327 |
agtgcaatggctgtgtcgattaacgggagaagtttctgtacggattctaacaagattgatgagccctttaaagttgaagaagctgagactgtgcccccac |
426 |
Q |
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| T |
48737085 |
agtgcaatggctgtgtcgattaacgggagaagtttctgtacggattctaacaagattgatgagccctttaaagttgaagaagctgagactgtgcccccac |
48736986 |
T |
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| Q |
427 |
ctccaactgagaaggtactatcctacaatcatgcgtccatttttgga |
473 |
Q |
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| T |
48736985 |
ctccaactgagaaggtactatcctacaatcatgcgtccatttttgga |
48736939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 102 - 261
Target Start/End: Complemental strand, 48737316 - 48737151
Alignment:
| Q |
102 |
agacaatcatctcgcgcttgattcattcctcaccatcctccatttccagactcaagtttgttttttctccctttttaaatcatcattgcagttttttgtt |
201 |
Q |
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| T |
48737316 |
agacaatcatctcgcgcttgattcattcctcatcatcctccatttccagactcaagtttgttttttctccctttttaaatcatcattgcagttttttgtt |
48737217 |
T |
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| Q |
202 |
ctatgatcgtatcgtttcaatatatgattgttagggt------taggttacacattctaagttata |
261 |
Q |
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| T |
48737216 |
ctatgatcgtatcgtttcaatatatgattgttagggttagggttaggttacacattctaagttata |
48737151 |
T |
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