View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1034_low_3 (Length: 393)
Name: NF1034_low_3
Description: NF1034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1034_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 30 - 348
Target Start/End: Original strand, 14467499 - 14467816
Alignment:
| Q |
30 |
cattttgtgtaccaattcctactgcatcgacaaaagcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcggcaattttcctcccca |
129 |
Q |
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| T |
14467499 |
cattttgtgcaccaattcctactgcattgacaaatgcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcgacaattttcctcccca |
14467598 |
T |
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| Q |
130 |
aaaattcttacacacctacaaattccaatgtgattgaatttaattttagcaaataacacaagtgtaagtgaacattcattacaacaataaatctaagcca |
229 |
Q |
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| T |
14467599 |
aaaattcttacacacctacaaattccaatgtgattgaatttaattttagcaaataacacagttgtaagtgaacattcactacaacaataaatctaagcca |
14467698 |
T |
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| Q |
230 |
aaatactagaaaagaagattttgatctctatatggtacaagtttcccgtttggtaacaggttcaattttgacacatgtgaatatgtatttcacagtggat |
329 |
Q |
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| T |
14467699 |
aactactagaaaagaagattttgatctctatatggtccaagtttcccgtttggtaacaggttggaacttgacatatgtgaatat-tatttcacagttgat |
14467797 |
T |
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| Q |
330 |
tcaatctatattgttggag |
348 |
Q |
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| T |
14467798 |
tcaatctataatgttggag |
14467816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 30 - 219
Target Start/End: Original strand, 14458616 - 14458805
Alignment:
| Q |
30 |
cattttgtgtaccaattcctactgcatcgacaaaagcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcggcaattttcctcccca |
129 |
Q |
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| T |
14458616 |
cattttgtgtaccaattcctactgcatcgacaaaagcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcggcaattttcctcccca |
14458715 |
T |
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| Q |
130 |
aaaattcttacacacctacaaattccaatgtgattgaatttaattttagcaaataacacaagtgtaagtgaacattcattacaacaataa |
219 |
Q |
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| T |
14458716 |
aaaattcttacacacctacaaattccaatgtgattgaatttagttttagcaaataacacaattgtaagtgaacattcattacaacaataa |
14458805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 203 - 243
Target Start/End: Original strand, 14458826 - 14458866
Alignment:
| Q |
203 |
attcattacaacaataaatctaagccaaaatactagaaaag |
243 |
Q |
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| T |
14458826 |
attcattacaacaataaatctaagccaacatactagaaaag |
14458866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 131; Significance: 7e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 30 - 232
Target Start/End: Original strand, 12069290 - 12069492
Alignment:
| Q |
30 |
cattttgtgtaccaattcctactgcatcgacaaaagcttcaactccaactacatccttcaaagcaaaaacgtagtcttcgagcggcaattttcctcccca |
129 |
Q |
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|||| ||| ||||||||||||||||||||| || |||||||||||| ||| || ||||||||||||||||| || ||| | || ||||||||||||||| |
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| T |
12069290 |
cattctgtttaccaattcctactgcatcgataagagcttcaactcctacttcactcttcaaagcaaaaacgttgttttctaacgacaattttcctcccca |
12069389 |
T |
|
| Q |
130 |
aaaattcttacacacctacaaattccaatgtgattgaatttaattttagcaaataacacaagtgtaagtgaacattcattacaacaataaatctaagcca |
229 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
12069390 |
aaaattctgacacacctacaaattccaatgcgattgaatttaattttagcaaaaaacacaagtgaaagtgaatattcattacaacaataaatctaagcca |
12069489 |
T |
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| Q |
230 |
aaa |
232 |
Q |
| |
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||| |
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| T |
12069490 |
aaa |
12069492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 12069487 - 12069536
Alignment:
| Q |
127 |
ccaaaaattcttacacacctacaaattccaatgtgattgaatttaatttt |
176 |
Q |
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| T |
12069487 |
ccaaaaattctgacacacctacaaattccaatgtgattgaatttaatttt |
12069536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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