View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1034_low_4 (Length: 305)
Name: NF1034_low_4
Description: NF1034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1034_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 67 - 280
Target Start/End: Complemental strand, 35451434 - 35451221
Alignment:
| Q |
67 |
gagcagagacaaattcataagtagacttagccgtgaacttttcttcagactcaagaacccatctccacatatcttcctaatccatcagtgacattgtgcc |
166 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35451434 |
gagcagagacaaattcataagtagacttagccgtgaacttttcttcagactcaagaacccatctccacatatcttcctaatccatcagtgacattgtgcc |
35451335 |
T |
|
| Q |
167 |
taactgcaccatgtggttattgagcatctcttcctcccaaacaaacagccgcctgagccaaagaaacacccatcgccatcctccctcttccgaaactccc |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35451334 |
taactgcaccatgtggttattgagcatctcttcctcccaaacaaacagccgcctgagccaaagaaacacccatcgccatcctccctcttccgaaactccc |
35451235 |
T |
|
| Q |
267 |
atatctgtggtgct |
280 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
35451234 |
atatctgtgatgct |
35451221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University