View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1034_low_6 (Length: 290)
Name: NF1034_low_6
Description: NF1034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1034_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39188527 - 39188749
Alignment:
| Q |
1 |
caaatgttatgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgcagggtcagagg |
100 |
Q |
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| T |
39188527 |
caaatgttatgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgcagggtcagagg |
39188626 |
T |
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| Q |
101 |
tggtacaaaacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggaggaaactttgtttccggagctaattt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
39188627 |
tggtacaaaacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggagggaactttgtttccggagctaattt |
39188726 |
T |
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| Q |
201 |
tgttggcttaggcaacggaactg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
39188727 |
tgttggcttaggcaacggaactg |
39188749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 56230798 - 56231023
Alignment:
| Q |
1 |
caaatgttatgatttaaccttttaatatatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctacctatgc---agggtcag |
97 |
Q |
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|||||||| || || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
56230798 |
caaatgttttggttaaaccttttaatgtatatttcatgcaggaagcttataggagcaagatacttcaataaaggttatgctgcctatgctgcagggtcaa |
56230897 |
T |
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| Q |
98 |
aggtggtacaaaacggcacacttgatactccacgagataataaaggtcatggatctcacacactatcaacattaggaggaaactttgtttccggagctaa |
197 |
Q |
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||| |||| |||||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||| |
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| T |
56230898 |
tggtactacagaacggcacacttgatactgcacgagacaatgaaggtcatggatctcacacactatcaacaataggaggaaactttgtttctggagttaa |
56230997 |
T |
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| Q |
198 |
ttttgttggcttaggcaacggaactg |
223 |
Q |
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| || |||||||||| || ||||||| |
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| T |
56230998 |
tgtttttggcttaggaaatggaactg |
56231023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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