View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_high_4 (Length: 481)
Name: NF10350_high_4
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_high_4 |
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| [»] scaffold0710 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 51767677 - 51768138
Alignment:
| Q |
18 |
agtggtgtatgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattacccta |
117 |
Q |
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| T |
51767677 |
agtggtgtatgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattacccta |
51767776 |
T |
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| Q |
118 |
tcacaagataatttagagaacttaccatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttca |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767777 |
tcacaagataatttagagaacttaccatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttca |
51767876 |
T |
|
| Q |
218 |
aaagtatttcattctttactttttctggtataatttccttatacttgggggatagcaagccaatacaccatgaaactttgcaccaatagacatataaatc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
51767877 |
aaagtatttcattctttactttttctggtataatttccttatacttgggggatagcaagccaatacaccatgaaactttgcaccaatagagatataaatc |
51767976 |
T |
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| Q |
318 |
aacctttctcttagtctctaaaaacaaactcattaaaggatttgtttaaaaagaaacctgacttgaatctttctttgacatctttttctaaaagcaacca |
417 |
Q |
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|||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51767977 |
aacctttctcctagcctctaaaaacaaacccattaaaggatttgtttaaaaagaaacctgacttgaatctttctttgacatctttttctaaaagcaacca |
51768076 |
T |
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| Q |
418 |
aaccaagcaatcaaagtcaaaatgttgagaagccaacacaaaaggacataattataatcaca |
479 |
Q |
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| T |
51768077 |
aaccaagcaatcaaagtcaaaatgttgagaagccaacacaaaaggacataattataatcaca |
51768138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 51772713 - 51772755
Alignment:
| Q |
426 |
aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa |
468 |
Q |
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| T |
51772713 |
aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa |
51772755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 51808267 - 51808309
Alignment:
| Q |
426 |
aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa |
468 |
Q |
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| T |
51808267 |
aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa |
51808309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 468
Target Start/End: Original strand, 51804324 - 51804360
Alignment:
| Q |
432 |
agtcaaaatgttgagaagccaacacaaaaggacataa |
468 |
Q |
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| T |
51804324 |
agtcaaaatgttgagaagccaacacaaaagtacataa |
51804360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 51771423 - 51771474
Alignment:
| Q |
309 |
atataaatcaacctttctcttagtctctaaaaacaaactcattaaaggattt |
360 |
Q |
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| T |
51771423 |
atataaattaacctttctctaagcctctaaaaacaaacccattcaaggattt |
51771474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 51771506 - 51771542
Alignment:
| Q |
384 |
atctttctttgacatctttttctaaaagcaaccaaac |
420 |
Q |
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| T |
51771506 |
atctttctttaccatctttttctaaaagcaaccaaac |
51771542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 51780552 - 51780596
Alignment:
| Q |
429 |
caaagtcaaaatgttgagaagccaacacaaaaggacataattata |
473 |
Q |
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| T |
51780552 |
caaagtcaaaatgttgagaagccaacgcagaagtacataaatata |
51780596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 7196 - 7240
Alignment:
| Q |
429 |
caaagtcaaaatgttgagaagccaacacaaaaggacataattata |
473 |
Q |
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| T |
7196 |
caaagtcaaaatgttgagaagccaacgcagaagtacataaatata |
7240 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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