View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_low_10 (Length: 314)
Name: NF10350_low_10
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 116 - 173
Target Start/End: Complemental strand, 19964447 - 19964390
Alignment:
| Q |
116 |
cacttgggtatgaatttgcaatactgatacattcaaggactacaataagaacactcat |
173 |
Q |
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| T |
19964447 |
cacttgggtatgaatttgcaatattgatacattcaatgactataataagaacactcat |
19964390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 290
Target Start/End: Complemental strand, 19964099 - 19963986
Alignment:
| Q |
176 |
ataacatggcattaagaatcgtagactcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaattt |
275 |
Q |
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| T |
19964099 |
ataacatggcattaacaatcatgtactcaaccatgctcaatcaccctatctatagctcagctcaatctatcaatgcaaccagaaaaaa-atgaaaaattt |
19964001 |
T |
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| Q |
276 |
ataaacttacccggc |
290 |
Q |
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| T |
19964000 |
ataaacttacccggc |
19963986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 174
Target Start/End: Original strand, 19909623 - 19909687
Alignment:
| Q |
112 |
gagacacttgggtatgaatttgcaatactgatacattcaaggac--tacaataagaacactcata |
174 |
Q |
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| T |
19909623 |
gagacacttgggtatgaatttgcaataccgatacattcaaggactatataataagaacactcata |
19909687 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 285
Target Start/End: Original strand, 1661204 - 1661291
Alignment:
| Q |
197 |
tagactcatccatgctcaactaccatatctacatcccaactaaatttatcaatgcagccagaaaaaatatggaaaatttataaacttac |
285 |
Q |
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| T |
1661204 |
tagactcaaccatgctcaaccaccctatctacagctcagctcaatctatcaatgtagtccgaaaaaa-atggaaaatttaaaaacttac |
1661291 |
T |
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