View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_low_11 (Length: 297)
Name: NF10350_low_11
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 34583887 - 34584162
Alignment:
| Q |
1 |
aatcccaatcaagtgtccaaaatggtgtaactttgagtcaagttatgcaaaaacaataattttaagtcttgctatttgcaaagccattgtctgaactctt |
100 |
Q |
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| T |
34583887 |
aatcccaatcatgtgtccaaaatggtgtaactttgagtcaagttatgcaaaaacaataattttaagtcttgctatttgcaaagccattgtctggactctt |
34583986 |
T |
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| Q |
101 |
taattgcaacaacgttttatatgttaaatgatgaaatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcatt |
200 |
Q |
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| T |
34583987 |
taattgcaacaacgttttatatgttaa---atgaaatcaatttaggtttattctcatatattaattttgcaaaggcattgtcttatattcgtttttcatt |
34584083 |
T |
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| Q |
201 |
gatgtcctcttttgttagcatttatgtttttgacatttgcagtatgatgctgagctacttttttaaataaaggccaagat |
280 |
Q |
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| T |
34584084 |
gatctcct-ttttgttagcatatatgtttttgacatttgcagtatgatgctgagctacttttttaaataaaggccaagat |
34584162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 34578268 - 34578371
Alignment:
| Q |
1 |
aatcccaatcaagtgtccaaaatggtgtaactttgagtcaagttatgcaaaaacaataattttaagtcttgcta-tttgcaaagccattgtctgaactct |
99 |
Q |
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||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | |||||||| ||||||||| ||| || || ||||| |
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| T |
34578268 |
aatcccaatcatgtgtccaaaattgtgtaactttgagtcaagttatgcaaaaacaataa-tttgattcttgctattttgcaaaggcatagtttggactct |
34578366 |
T |
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| Q |
100 |
ttaat |
104 |
Q |
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||||| |
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| T |
34578367 |
ttaat |
34578371 |
T |
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