View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10350_low_13 (Length: 282)
Name: NF10350_low_13
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 18 - 276
Target Start/End: Original strand, 36728880 - 36729139
Alignment:
| Q |
18 |
acaagcctgatatcaaacccatttctggggagtttaccactccactagttccaaatgaaggtactatattggaatgtgaggggaattggtaacctgtaca |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36728880 |
acaagcctgatatcaaatccatttctggggagtttaccactccactagttccaaatgaaggttctatattggaatgtgaggggaattggtaacctgtaca |
36728979 |
T |
|
| Q |
118 |
ctcaaatgaaggttctata-ttggctcttcttattagtgataactccaaaacttcttatgtttcacctttaannnnnnnncaaaatatggatatctcatg |
216 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36728980 |
ctcaaatgaaggttctatatttggctcttcttattagtgataactccaaaacttcttatgtttcacctttaaatttttttcaaaatatggatatctcatg |
36729079 |
T |
|
| Q |
217 |
attcttgtacacaaattgttcctgatcactagaagatcacagttattggttcacctatgc |
276 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36729080 |
attcttgtacacaaattgttcctgatcactagaagatcccagttattggttcacctatgc |
36729139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Original strand, 36715899 - 36716001
Alignment:
| Q |
142 |
tcttcttattagtgataactccaaaacttcttatgtttcacctttaannnnnnnncaaaatatggatatctcatgattcttgtacacaaattgttcctga |
241 |
Q |
| |
|
|||||||||| ||||||||||||| |||| ||||| ||||||||| | |||||||| || |||||||||||||||||||||||||||| ||| |
|
|
| T |
36715899 |
tcttcttattggtgataactccaacacttgttatgcttcaccttttaaaatttt-caaaatattgacatctcatgattcttgtacacaaattgtttatga |
36715997 |
T |
|
| Q |
242 |
tcac |
245 |
Q |
| |
|
|||| |
|
|
| T |
36715998 |
tcac |
36716001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University