View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10350_low_14 (Length: 280)
Name: NF10350_low_14
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_14 |
 | |
|
| [»] scaffold0074 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 9440420 - 9440655
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9440420 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
9440519 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9440520 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
9440619 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9440620 |
tatcatggcatacataaggcttcccaccgccgatgc |
9440655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 24594820 - 24595049
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || | |
|
|
| T |
24594820 |
cttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatat |
24594919 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
| |||| ||||||||||||| ||| |||||| | |||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||| | |
|
|
| T |
24594920 |
atctcaggattctcttaacaacatcccaatgttttttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtaaa |
24595019 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
24595020 |
tatcatggcatacataaggcttcccaccgc |
24595049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 26977222 - 26977457
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26977222 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
26977321 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26977322 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
26977421 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26977422 |
tatcatggcatacataaggcttcccaccgccgatgc |
26977457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 27875038 - 27875273
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
27875038 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
27875137 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27875138 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
27875237 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27875238 |
tatcatggcatacataaggcttcccaccgccgatgc |
27875273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 36 - 265
Target Start/End: Original strand, 1472793 - 1473022
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| |||| | || || |||||| ||||||||| |||||| || |||||||||| || | |
|
|
| T |
1472793 |
cttttatcaagatcacctgcaaaatctgaatcaacataacctttgacgataaattccaatcctctgaaacataatgcaacatctaaggttccttttatat |
1472892 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
1472893 |
atctcaggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctgaccttgtaca |
1472992 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgc |
265 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1472993 |
tatcatggcatacataaggcttcccaccgc |
1473022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 39 - 265
Target Start/End: Complemental strand, 21965368 - 21965152
Alignment:
| Q |
39 |
ttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacc |
138 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||| |||||||| | ||||||||||| ||| |||| ||||||||||||||||| |
|
|
| T |
21965368 |
ttatcatgatcaagtgcaaaattcgaatcaatataacccctgatagttaactttaatcctccgaaa-atattgcaa-------ggttcctttaatgtacc |
21965277 |
T |
|
| Q |
139 |
tcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatat |
238 |
Q |
| |
|
|| || |||| ||| || ||||| |||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21965276 |
tcttg-ttcttttaccaacattctgatgctctttacc-gaatctgccataaaccgactaactactcccactgcttgtgcaatgtctggtcttttacatat |
21965179 |
T |
|
| Q |
239 |
catggcatacataaggcttcccaccgc |
265 |
Q |
| |
|
|||| |||||||||||||||| ||||| |
|
|
| T |
21965178 |
catgacatacataaggcttccaaccgc |
21965152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 41722398 - 41722163
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
41722398 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
41722299 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41722298 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
41722199 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41722198 |
tatcatggcatacataaggcttcccaccgccgatgc |
41722163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 34355998 - 34355763
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
34355998 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacatactgcaacacctaaggttcctttaatgt |
34355899 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34355898 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
34355799 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34355798 |
tatcatggcatacataaggcttcccaccgccgatgc |
34355763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 30946512 - 30946747
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30946512 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
30946611 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30946612 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
30946711 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30946712 |
tatcatggcatacataaggcttcccaccgccgatgc |
30946747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 42269891 - 42269656
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
42269891 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
42269792 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42269791 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
42269692 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
42269691 |
tatcatggcatacataaggcttcccaccgccgatgc |
42269656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 48698150 - 48698385
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48698150 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
48698249 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48698250 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
48698349 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
48698350 |
tatcatggcatacataaggcttcccaccgccgatgc |
48698385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 2002871 - 2002644
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || | |
|
|
| T |
2002871 |
cttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatat |
2002772 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
| |||| ||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
2002771 |
atctcaggattctcttaacagcatcccaatgctctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtaca |
2002672 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccacc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2002671 |
tatcatggcatacataaggcttcccacc |
2002644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 228; Significance: 1e-126; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 5819604 - 5819839
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5819604 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
5819703 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5819704 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
5819803 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5819804 |
tatcatggcatacataaggcttcccaccgccgatgc |
5819839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 54545133 - 54544898
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54545133 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctgaggttcctttaatgt |
54545034 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54545033 |
acctcatgattctcttaacaacattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
54544934 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
54544933 |
tatcatggcatacataaggcttcccaccgccgatgc |
54544898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 36 - 263
Target Start/End: Complemental strand, 42588936 - 42588709
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| || |||||| |||||| || |||||||||| || | |
|
|
| T |
42588936 |
cttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgacacataatgcaacatctaaggttccttttatat |
42588837 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
| |||| ||||||||||||||||| |||||| |||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
42588836 |
atctcaggattctcttaacagcatcccaatgttctttaccaggatccgccataaatcgactaaccgctcccactgcttgtgcaatgtctggccttgtaca |
42588737 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccacc |
263 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
42588736 |
tatcatggcatacataaggcttcccacc |
42588709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 101 - 265
Target Start/End: Complemental strand, 25880578 - 25880414
Alignment:
| Q |
101 |
gaaacataacgcaacacctgaggttcctttaatgtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaacc |
200 |
Q |
| |
|
||||||||| ||||| ||||||||||||| || || |||| |||||| || | | ||| ||||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
25880578 |
gaaacataatacaacatctgaggttccttttatatatctcaggattcttttgataccatcccaatgctctttaccaggatccgccataaatcgactaatt |
25880479 |
T |
|
| Q |
201 |
actcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgc |
265 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25880478 |
acttccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttcccaccgc |
25880414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 37 - 265
Target Start/End: Complemental strand, 25880830 - 25880602
Alignment:
| Q |
37 |
ttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcc---tttaat |
133 |
Q |
| |
|
|||||||| |||| ||||||||||||||||| ||||||||| | ||| | || || ||| ||||||||| |||||| |||||||| | ||| || |
|
|
| T |
25880830 |
ttttatcaagatctcctgcaaaatctgaatctacataaccctttacaataaattccaatct---gaaacataatgcaacatctgaggtttccttttttat |
25880734 |
T |
|
| Q |
134 |
gtacctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgta |
233 |
Q |
| |
|
|| |||| |||||| |||| | ||| |||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25880733 |
atatctcacgattcttttaataacatctcaatgctctttaccaggatccgccataaatcgactaattgctcccactgcttgtgcaatgtctggtcttgta |
25880634 |
T |
|
| Q |
234 |
catatcatggcatacataaggcttcccaccgc |
265 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |
|
|
| T |
25880633 |
catatcatggcatacataaggtttcccaccgc |
25880602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 25878161 - 25878061
Alignment:
| Q |
162 |
caatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcatacataaggcttccca |
261 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||| || ||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
25878161 |
caatgctctttaccaggatccgccataaatcgactaattgttctcactgcttgtgcaatgtctagtcttgtacatatcatgtcatacataagacttccca |
25878062 |
T |
|
| Q |
262 |
c |
262 |
Q |
| |
|
| |
|
|
| T |
25878061 |
c |
25878061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 829467 - 829232
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
829467 |
cttttatcctgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataccgcaacacctggggttcctttaatgt |
829368 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
829367 |
acctcatgattctcttaacaacattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
829268 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
829267 |
tatcatggcatacataaggcttcccaccgccgatgc |
829232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 36 - 271
Target Start/End: Complemental strand, 28715071 - 28714836
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
|||| |||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
28715071 |
ctttcatcatgatcaccggcaaaatctgaatcaacataacccatgacaattaactctgatcctccgaaacatattgcaacacatgaggttcctttaatgt |
28714972 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||||||||||||| ||||||||| |||| ||||||||| |
|
|
| T |
28714971 |
acctcatgattctcttaacaacattccaatgctctttataaggatctgtcataaaccgactaaccactcccactaattgtgcaatctctgatcttgtaca |
28714872 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28714871 |
tatcatggcatacataaggcttcccaccgccgatgc |
28714836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 263
Target Start/End: Original strand, 13841251 - 13841474
Alignment:
| Q |
39 |
ttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgtacc |
138 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||| ||||||| |||| || || | |
|
|
| T |
13841251 |
ttatcatgatcacttgtaaaatctgaatcaacataacccttgtcatttaactctgatcctccgaaacatattgcaacacttgaggtttctttgatatatc |
13841350 |
T |
|
| Q |
139 |
tcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatat |
238 |
Q |
| |
|
||| |||| |||||| ||| || | | |||||| |||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||||||| |
|
|
| T |
13841351 |
tcaaaattcatttaacaa-atttaaaggatatttaccaggatatgccataaaccgactaaccactcccactatttgtgtagtgtctggtcttgtacatat |
13841449 |
T |
|
| Q |
239 |
catggcatacataaggcttcccacc |
263 |
Q |
| |
|
||||| ||||||||||||| ||||| |
|
|
| T |
13841450 |
catggaatacataaggctttccacc |
13841474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0074 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 36 - 271
Target Start/End: Original strand, 28364 - 28599
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||||| |
|
|
| T |
28364 |
cttttatcatgatcacctacaaaatctgaatcaacataacccctgacagttaactctgatcctctgaaacatattgcaacatccgaggttcctttaatgt |
28463 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28464 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
28563 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttcccaccgcctatgc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28564 |
tatcatggcatacataaggcttcccaccgccgatgc |
28599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 36 - 201
Target Start/End: Original strand, 2324436 - 2324601
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | |||| || ||||||||||||||||||||||||| |||||||||||||||||||| || | |
|
|
| T |
2324436 |
cttttatcatgatcacctgcaaaatctgactcaagaaatcccccaacggttaactctgatcctccgaaacatattgcaacacctgaggttccttttatat |
2324535 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaacca |
201 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
2324536 |
acatcatgattctcttaacagcattccaatgctctttaccaagatccgccataaaccgaccaacca |
2324601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 147 - 265
Target Start/End: Original strand, 7506016 - 7506134
Alignment:
| Q |
147 |
ctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtacatatcatggcat |
246 |
Q |
| |
|
||||||||| ||| ||||||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7506016 |
ctcttaacaacatcccaatgctctttaccaggatccgccataaattgactagccgctcccactgcttgtgcaatgtctggccttgtacatatcatggcat |
7506115 |
T |
|
| Q |
247 |
acataaggcttcccaccgc |
265 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
7506116 |
acataaggcttcccaccgc |
7506134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 7505092 - 7505210
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| | || || |||||| ||||||||| |||||| || |||||||||| || | |
|
|
| T |
7505092 |
cttttatcaagatcacctgcaaaatctgaatcaacataacctttgacaataaattccaatcctctgaaacataatgcaacatctaaggttccttttatat |
7505191 |
T |
|
| Q |
136 |
acctcatgattctcttaac |
154 |
Q |
| |
|
| |||| |||||||||||| |
|
|
| T |
7505192 |
atctcaggattctcttaac |
7505210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 41 - 110
Target Start/End: Complemental strand, 22509903 - 22509834
Alignment:
| Q |
41 |
atcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataac |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| ||| | ||||||| ||||||||||||||||||| |
|
|
| T |
22509903 |
atcatgatcaccttcaaaatctgaatcaacataacacctaatggttaactttgatcctccgaaacataac |
22509834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 36 - 258
Target Start/End: Complemental strand, 34973522 - 34973300
Alignment:
| Q |
36 |
cttttatcatgatcacctgcaaaatctgaatcaacataacccctgacagttaactctgatcctccgaaacataacgcaacacctgaggttcctttaatgt |
135 |
Q |
| |
|
||||||| ||||||| |||||||||||||||| ||||||||||| |||||||| | |||||||||||| |||| ||||||||||||||||||||| ||| |
|
|
| T |
34973522 |
cttttattatgatcatctgcaaaatctgaatcgacataacccctaacagttaaatttgatcctccgaatcatattgcaacacctgaggttcctttattgt |
34973423 |
T |
|
| Q |
136 |
acctcatgattctcttaacagcattccaatgctctttacccggatccgccataaaccgactaaccactcccactgcttgtgcaatgtctggtcttgtaca |
235 |
Q |
| |
|
||||||| ||||| | ||| |||| ||||||||||| |||||| ||| |||| |||||||||||| | ||| |||| |||||||| |||||||||| |
|
|
| T |
34973422 |
acctcataattctatcgacatcattttgatgctctttactaggatcctccacaaactgactaaccactctcgctgtttgttcaatgtcttgtcttgtaca |
34973323 |
T |
|
| Q |
236 |
tatcatggcatacataaggcttc |
258 |
Q |
| |
|
||| | | ||||||||||||||| |
|
|
| T |
34973322 |
tataaagacatacataaggcttc |
34973300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University