View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_low_15 (Length: 274)
Name: NF10350_low_15
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 7e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 10291502 - 10291265
Alignment:
| Q |
11 |
atgaaccgttaaagttactaaatctcaaagggtaaaaaatccatttgctttagagtcaaaagtagaatccatttcctatactttttgtgttccaatattt |
110 |
Q |
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| T |
10291502 |
atgaacccttaaagttaccaaatctcaaagggtgaaaaatccatttgctttagagtcaaaagtagaatccatttcctgtactttttgtgctccattattt |
10291403 |
T |
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| Q |
111 |
aaaatagaaagttgtacttgtgttcaccaattttaacattgatcattgtatgtcattcactaataaatactcaaacgttttacatataaaaaatatgata |
210 |
Q |
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| T |
10291402 |
aaaatagaaagttgtacttgtgttcaccaattttaacattgatcattgtatgtcattcactaataaatactcaaatgttttacatataaaaaatatg--- |
10291306 |
T |
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| Q |
211 |
ctaactaatacgcacttacatgtctagtaaaatttgaaaccaagttta |
258 |
Q |
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| T |
10291305 |
-------atacgcacttacatttctagtaaaatttgaaaccaagttta |
10291265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 166 - 258
Target Start/End: Complemental strand, 10306420 - 10306328
Alignment:
| Q |
166 |
ttcactaataaatactcaaacgttttacatataaaaaatatgatactaactaatacgcacttacatgtctagtaaaatttgaaaccaagttta |
258 |
Q |
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| T |
10306420 |
ttcactaataaatactcaaatgttttacatataaaaaatatgatattaactaatacgcacttacatttctagtaaaatttgaaaccaagttta |
10306328 |
T |
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