View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10350_low_3 (Length: 522)
Name: NF10350_low_3
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 23 - 508
Target Start/End: Original strand, 43366005 - 43366494
Alignment:
| Q |
23 |
atcaccaatttgtgcagacctataattattgggtagaaatttcatcctatacttttttgcaaatgaccacggtcccactctatgaaataaagttatagca |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43366005 |
atcaccaatttgtgcagacctataattattgggtagaaatttcatcctatacttttttgcaaatgaccagggtcccactctatgaaataaagttatagca |
43366104 |
T |
|
| Q |
123 |
tattacatattacatgttttagattgcagcatagttatattagtactcagaatgcaattatgtctactaatgaaatggaagaactattcatgcttaaata |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43366105 |
tattacatattacatgttttagattgcagcatagttatattagtactcagaatgcaattatgtctactaatgaaatggaagaactattcatgcttaaata |
43366204 |
T |
|
| Q |
223 |
aaacaatttggttacataaagaaagatatacatattccaagtaatactttaacctcactgaactccttccttta----tatttatttgatcaaaaggatt |
318 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
43366205 |
aaaaaaattggttacataaagaaagatatacatattccaagtaatactttaacctcactgaactccttcctttatatttatttatttgatcaaaaggatt |
43366304 |
T |
|
| Q |
319 |
gcaaaaacaaacaaatgccacagttcattaataaagaagcttagcttacccctgttctctgttgatttaagcctccactggttgcgattaacaagtatcg |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43366305 |
gcaaaaacaaacaaatgccacagttcattaataaagaagcttagcttacccctgttctctgttgatttaagcctccactggttgcgattaacaagtatcg |
43366404 |
T |
|
| Q |
419 |
gtccggatgagttttgctattagcctctgcaacaattagaaatataaataaatacactcaatcaaaattaaattgatgagatgaaaaaag |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43366405 |
gtccggatgagttttgctattagcctctgcaacaattagaaatataaataaatacactcaatcaaaattaaattgatgagatgaaaaaag |
43366494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University