View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_low_4 (Length: 486)
Name: NF10350_low_4
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 19 - 475
Target Start/End: Original strand, 39073408 - 39073864
Alignment:
| Q |
19 |
attgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagcta |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073408 |
attgcagctatgcaaccggtggacatcgacccagcaacgattcgaaaaccaaaacgaagaaacgttcgaatcagcgaagatccacaaagtgttgcagcta |
39073507 |
T |
|
| Q |
119 |
gacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073508 |
gacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacagcttctatgcttgatgaagccat |
39073607 |
T |
|
| Q |
219 |
tcgttatgttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073608 |
tcgttatgttaagtttttgaagagacaaatcaagttgcttcaatccactcctcaaaatcaacaacaacaacacattcaattgccactttcatcacaatgc |
39073707 |
T |
|
| Q |
319 |
attaattctacaactcctagtgctttgttattgtccccttcttccggttgtgacgtctggccttttgcaccaaatttactactcacttccacaacagctg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39073708 |
attaattctacaactcctagtgctttgttattgtccccttcttccggttgtgacgtttggccttttgcaccaaatttactactcacttccacaacagctg |
39073807 |
T |
|
| Q |
419 |
ccacagtggacttacccgccggagttcaatttgacgccggaggacattcacaggttc |
475 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39073808 |
ccacagtggacttacccgccggagttcaatttgacgccggaggacattcacatgttc |
39073864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 97 - 246
Target Start/End: Original strand, 6259580 - 6259729
Alignment:
| Q |
97 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatacag |
196 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||||||||| ||||| | || | || | |||||| | || ||||||||||| |||||||| || | |
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| T |
6259580 |
gatccacaaagtgtagcagcaagacatagaagagaaagaattagtgaaagaataaggatattacaaagattagtacctggtggaacaaaaatggacactg |
6259679 |
T |
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| Q |
197 |
cttctatgcttgatgaagccattcgttatgttaagtttttgaagagacaa |
246 |
Q |
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| T |
6259680 |
cttctatgttagatgaagcaatacattatgtgaagtttttgaagaaacaa |
6259729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 95 - 234
Target Start/End: Original strand, 46899304 - 46899443
Alignment:
| Q |
95 |
aagatccacaaagtgttgcagctagacatagaagagaaagaatcagtgagaagattcgtatccttcaaagacttgttcctggtggaactaaaatggatac |
194 |
Q |
| |
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||||||| || ||| | ||||||||||| |||||||||||||| || ||||| || | || || |||||| | || || |||||||||||||||||||| |
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| T |
46899304 |
aagatcctcagagtatagcagctagacacagaagagaaagaataagcgagaaaataagaatactgcaaagaatggtaccaggtggaactaaaatggatac |
46899403 |
T |
|
| Q |
195 |
agcttctatgcttgatgaagccattcgttatgttaagttt |
234 |
Q |
| |
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|| || ||| | |||||||| |||| ||||||||||||| |
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| T |
46899404 |
tgcatcaatgttggatgaagctattcattatgttaagttt |
46899443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 25645321 - 25645275
Alignment:
| Q |
97 |
gatccacaaagtgttgcagctagacatagaagagaaagaatcagtga |
143 |
Q |
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|||||||||||||||||||||||| | |||||| | ||||||||||| |
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| T |
25645321 |
gatccacaaagtgttgcagctagagaaagaagacatagaatcagtga |
25645275 |
T |
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