View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10350_low_5 (Length: 481)

Name: NF10350_low_5
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10350_low_5
NF10350_low_5
[»] chr1 (7 HSPs)
chr1 (18-479)||(51767677-51768138)
chr1 (426-468)||(51772713-51772755)
chr1 (426-468)||(51808267-51808309)
chr1 (432-468)||(51804324-51804360)
chr1 (309-360)||(51771423-51771474)
chr1 (384-420)||(51771506-51771542)
chr1 (429-473)||(51780552-51780596)
[»] scaffold0710 (1 HSPs)
scaffold0710 (429-473)||(7196-7240)


Alignment Details
Target: chr1 (Bit Score: 446; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 18 - 479
Target Start/End: Original strand, 51767677 - 51768138
Alignment:
Q  18 agtggtgtatgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattacccta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51767677 agtggtgtatgttgcctaccaaaagtttaagaagttatggaatctcagatatcagttggtcaaacatggaaaccattttacctttttctttattacccta 51767776  T
Q  118 tcacaagataatttagagaacttaccatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttca 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51767777 tcacaagataatttagagaacttaccatatcataaagttagaattccagatcataaagctctggtgattcatctccagttacaaaagcatgcgtagttca 51767876  T
Q  218 aaagtatttcattctttactttttctggtataatttccttatacttgggggatagcaagccaatacaccatgaaactttgcaccaatagacatataaatc 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51767877 aaagtatttcattctttactttttctggtataatttccttatacttgggggatagcaagccaatacaccatgaaactttgcaccaatagagatataaatc 51767976  T
Q  318 aacctttctcttagtctctaaaaacaaactcattaaaggatttgtttaaaaagaaacctgacttgaatctttctttgacatctttttctaaaagcaacca 417  Q
    |||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51767977 aacctttctcctagcctctaaaaacaaacccattaaaggatttgtttaaaaagaaacctgacttgaatctttctttgacatctttttctaaaagcaacca 51768076  T
Q  418 aaccaagcaatcaaagtcaaaatgttgagaagccaacacaaaaggacataattataatcaca 479  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51768077 aaccaagcaatcaaagtcaaaatgttgagaagccaacacaaaaggacataattataatcaca 51768138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 51772713 - 51772755
Alignment:
Q  426 aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa 468  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  51772713 aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa 51772755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 426 - 468
Target Start/End: Original strand, 51808267 - 51808309
Alignment:
Q  426 aatcaaagtcaaaatgttgagaagccaacacaaaaggacataa 468  Q
    |||||||||||||||||||||||||||||||||||| ||||||    
T  51808267 aatcaaagtcaaaatgttgagaagccaacacaaaagtacataa 51808309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 432 - 468
Target Start/End: Original strand, 51804324 - 51804360
Alignment:
Q  432 agtcaaaatgttgagaagccaacacaaaaggacataa 468  Q
    |||||||||||||||||||||||||||||| ||||||    
T  51804324 agtcaaaatgttgagaagccaacacaaaagtacataa 51804360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 51771423 - 51771474
Alignment:
Q  309 atataaatcaacctttctcttagtctctaaaaacaaactcattaaaggattt 360  Q
    |||||||| ||||||||||| || |||||||||||||| |||| ||||||||    
T  51771423 atataaattaacctttctctaagcctctaaaaacaaacccattcaaggattt 51771474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 384 - 420
Target Start/End: Original strand, 51771506 - 51771542
Alignment:
Q  384 atctttctttgacatctttttctaaaagcaaccaaac 420  Q
    ||||||||||  |||||||||||||||||||||||||    
T  51771506 atctttctttaccatctttttctaaaagcaaccaaac 51771542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 51780552 - 51780596
Alignment:
Q  429 caaagtcaaaatgttgagaagccaacacaaaaggacataattata 473  Q
    |||||||||||||||||||||||||| || ||| |||||| ||||    
T  51780552 caaagtcaaaatgttgagaagccaacgcagaagtacataaatata 51780596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0710 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0710
Description:

Target: scaffold0710; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 429 - 473
Target Start/End: Original strand, 7196 - 7240
Alignment:
Q  429 caaagtcaaaatgttgagaagccaacacaaaaggacataattata 473  Q
    |||||||||||||||||||||||||| || ||| |||||| ||||    
T  7196 caaagtcaaaatgttgagaagccaacgcagaagtacataaatata 7240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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