View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10350_low_7 (Length: 365)

Name: NF10350_low_7
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10350_low_7
NF10350_low_7
[»] chr1 (2 HSPs)
chr1 (243-357)||(39367135-39367249)
chr1 (282-357)||(12190688-12190762)
[»] chr2 (2 HSPs)
chr2 (265-343)||(27150272-27150350)
chr2 (307-357)||(7703425-7703475)
[»] chr4 (2 HSPs)
chr4 (271-357)||(24558121-24558205)
chr4 (243-292)||(24558071-24558121)
[»] chr5 (1 HSPs)
chr5 (289-337)||(31571741-31571789)
[»] chr6 (1 HSPs)
chr6 (274-337)||(24631335-24631398)


Alignment Details
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 243 - 357
Target Start/End: Original strand, 39367135 - 39367249
Alignment:
Q  243 gtggctcacaatgagtttgtcttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgt 342  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    |||||||||| || ||||    
T  39367135 gtggctcgcaatgagtttgttttttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaaaaaatgtttaacatgattcttgtgt 39367234  T
Q  343 tttcctgttcatctc 357  Q
    | |||||||||||||    
T  39367235 tgtcctgttcatctc 39367249  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 282 - 357
Target Start/End: Complemental strand, 12190762 - 12190688
Alignment:
Q  282 taggaagtcttatgagtgagtgttgttattgttgaacaaga-aattaacatgatcctcgtgttttcctgttcatctc 357  Q
    |||||||||||||||||||||||||||||||||||||||||   |||||||| ||||  |||| |||||||||||||    
T  12190762 taggaagtcttatgagtgagtgttgttattgttgaacaagagttttaacatgttcct--tgttatcctgttcatctc 12190688  T

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Target: chr2 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 343
Target Start/End: Original strand, 27150272 - 27150350
Alignment:
Q  265 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgtt 343  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||    
T  27150272 tttgagttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagtttaacatgatccttgtgtt 27150350  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 307 - 357
Target Start/End: Complemental strand, 7703475 - 7703425
Alignment:
Q  307 ttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 357  Q
    ||||||||||||||||  ||||||||||||| ||||| |||||||||||||    
T  7703475 ttattgttgaacaagagtttaacatgatccttgtgttgtcctgttcatctc 7703425  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 271 - 357
Target Start/End: Original strand, 24558121 - 24558205
Alignment:
Q  271 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcctcgtgttttcctgttcatctc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||||  |||| || ||||||||||    
T  24558121 ttattaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagagcttaacacgatcct--tgttgtcttgttcatctc 24558205  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 24558071 - 24558121
Alignment:
Q  243 gtggctcacaatgagtttgtcttt-tgagttattaatgtgtaggaagtctt 292  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||    
T  24558071 gtggctctcaatgagtttgtctttctgagttattaatgtgtaggaagtctt 24558121  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 289 - 337
Target Start/End: Complemental strand, 31571789 - 31571741
Alignment:
Q  289 tcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 337  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||||    
T  31571789 tcttatgagtgagtgttgttattgttgaacaagagtttaacatgatcct 31571741  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 337
Target Start/End: Original strand, 24631335 - 24631398
Alignment:
Q  274 ttaatgtgtaggaagtcttatgagtgagtgttgttattgttgaacaagaaattaacatgatcct 337  Q
    ||||| ||||| || ||||||||||||| |||||| |||||||||||||  |||| ||||||||    
T  24631335 ttaatttgtagaaaatcttatgagtgagagttgttcttgttgaacaagagtttaatatgatcct 24631398  T

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