View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10350_low_8 (Length: 346)
Name: NF10350_low_8
Description: NF10350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10350_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 38268927 - 38269248
Alignment:
| Q |
19 |
tgcataactcatttgaagtggaaaatttcccatcaaatctgagggttgaatgaacctatctatgaaaaactctttgttgcaagaaccttccatttccatt |
118 |
Q |
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| T |
38268927 |
tgcataactcatttgaagtggaaaatttcccatcaaatctgagggttgaatgaacctatctatgaaaaactctttgttgcaagaaccttccatttccatt |
38269026 |
T |
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| Q |
119 |
gcatatgcttttggtgaaattgaagatgttgttctttgctcatagctagaagctgcatctgattttgaactctctgatttcaaaaggttcaattcattgg |
218 |
Q |
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| T |
38269027 |
gcatatgcttttggtgaaattgaagatgttgttctttgctcatagctagaagctgcatctgactttgaactctctgatttcaaaaggttcaattcattgg |
38269126 |
T |
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| Q |
219 |
ataataatatatctggtgctttctcttgactcttattagcattttcctctccattattctcaacctcagacaatggtttatgagtcacaggatctatacc |
318 |
Q |
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| T |
38269127 |
ataataatatatctggtgctttctctcgactcttattagcattttcctctccattattctcaacctcagacaatggtttatgagtcacaggatctatacc |
38269226 |
T |
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| Q |
319 |
tttttgcctcagtctctgcttc |
340 |
Q |
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| T |
38269227 |
tttttgcctcagtctcttcttc |
38269248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 187 - 240
Target Start/End: Complemental strand, 8061483 - 8061430
Alignment:
| Q |
187 |
actctctgatttcaaaaggttcaattcattggataataatatatctggtgcttt |
240 |
Q |
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| T |
8061483 |
actctctgatttcaaaaggttcaattcattggatagtaatatctctggtgcttt |
8061430 |
T |
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