View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10351_high_1 (Length: 575)
Name: NF10351_high_1
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_high_1 |
 | |
|
| [»] scaffold0005 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 514; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 17 - 573
Target Start/End: Original strand, 52651918 - 52652479
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgt-----aacatcaaaagatactagattggga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52651918 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtactgtaacatcaaaagatactagattggga |
52652017 |
T |
|
| Q |
112 |
caatcccgtatagaaagaatcttgagtttagggaacaaatctaaggtttagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaag |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
52652018 |
caaccccgtatagaaagaatcttgagtttagggaacaaatctaaggtttagtgagggaatcacaactattcccaatggacaaactgcgaataaaggaaag |
52652117 |
T |
|
| Q |
212 |
cttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagatta |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52652118 |
cttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggaagcagggtaagggaaggatcttagatta |
52652217 |
T |
|
| Q |
312 |
gaacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttct |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52652218 |
gaacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttct |
52652317 |
T |
|
| Q |
412 |
gcaactttggcggcaaaaacaacaattttgatgcattagacacgctgagtgtttgaaagaatatttcttcatcatcaaaactttggatggatggagtttt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52652318 |
gcaactttggcggcaaaaacaacaattttgatgcattagacacactgagtgtttgaaagaatatttcttcatcatcaaaactttggatggatggagtttt |
52652417 |
T |
|
| Q |
512 |
ttcctttacgtaggttgttcctgtgtcagttgcattagtaagaggaagaacaatagtctgtg |
573 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
52652418 |
ttcctttacgtgggttgttcctgtgtcagttgcattagtaagaggaagaacaatagtttgtg |
52652479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 31895377 - 31894939
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtaacatcaaaagatactagattgggacaatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31895377 |
aagacgtcaatccagggcaatctcttatttcaaaacattccaatggaaaatcacccttatgcacccctgtaacatcaaaagatactagattgggacagtt |
31895278 |
T |
|
| Q |
117 |
ccgtatagaaagaatcttgagtttagggaacaaatctaaggtt----tagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaagc |
212 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
31895277 |
ccatataaaaagaatcttgagtttagggaacaaatctaaggtcaaggtagtgagagaatcacaactattcccaatggacaatctgtgaataaaggaaaga |
31895178 |
T |
|
| Q |
213 |
ttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagattag |
312 |
Q |
| |
|
||||||||||||||| || || |||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
31895177 |
ttctctcttgattttgacgatcggagtaattcaaaatttctacacttgcttatgtaaagttcagtcagggatggagggtaagggatggaccttagatcag |
31895078 |
T |
|
| Q |
313 |
aacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctg |
412 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| | |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31895077 |
aacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattcttaggctctg |
31894978 |
T |
|
| Q |
413 |
caactttggcggcaaaaacaacaattttgatgcattaga |
451 |
Q |
| |
|
|||||| || | ||||| ||| |||| |||||||||||| |
|
|
| T |
31894977 |
caacttgggtgccaaaaccaataattgtgatgcattaga |
31894939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 31899961 - 31899523
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtaacatcaaaagatactagattgggacaatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31899961 |
aagacgtcaatccagggcaatctcttatttcaaaacattccaatggaaaatcacccttatgcacccctgtaacatcaaaagatactagattgggacagtt |
31899862 |
T |
|
| Q |
117 |
ccgtatagaaagaatcttgagtttagggaacaaatctaaggtt----tagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaagc |
212 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
31899861 |
ccatataaaaagaatcttgagtttagggaacaaatctaaggtcaaggtagtgagagaatcacaactattcccaatggacaatctgtgaataaaggaaaga |
31899762 |
T |
|
| Q |
213 |
ttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagattag |
312 |
Q |
| |
|
||||||||||||||| || || |||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
31899761 |
ttctctcttgattttgacgatcggagtaattcaaaatttctacacttgcttatgtaaagttcagtcagggatggagggtaagggatggaccttagatcag |
31899662 |
T |
|
| Q |
313 |
aacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctg |
412 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| | |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31899661 |
aacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattcttaggctctg |
31899562 |
T |
|
| Q |
413 |
caactttggcggcaaaaacaacaattttgatgcattaga |
451 |
Q |
| |
|
|||||| || | ||||| ||| |||| |||||||||||| |
|
|
| T |
31899561 |
caacttgggtgccaaaaccaataattgtgatgcattaga |
31899523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 31915670 - 31915232
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtaacatcaaaagatactagattgggacaatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31915670 |
aagacgtcaatccagggcaatctcttatttcaaaacattccaatggaaaatcacccttatgcacccctgtaacatcaaaagatactagattgggacagtt |
31915571 |
T |
|
| Q |
117 |
ccgtatagaaagaatcttgagtttagggaacaaatctaaggtt----tagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaagc |
212 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
31915570 |
ccatataaaaagaatcttgagtttagggaacaaatctaaggtcaaggtagtgagagaatcacaactattcccaatggacaatctgtgaataaaggaaaga |
31915471 |
T |
|
| Q |
213 |
ttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagattag |
312 |
Q |
| |
|
||||||||||||||| || || |||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
31915470 |
ttctctcttgattttgacgatcggagtaattcaaaatttctacacttgcttatgtaaagttcagtcagggatggagggtaagggatggaccttagatcag |
31915371 |
T |
|
| Q |
313 |
aacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctg |
412 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| | |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31915370 |
aacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattcttaggctctg |
31915271 |
T |
|
| Q |
413 |
caactttggcggcaaaaacaacaattttgatgcattaga |
451 |
Q |
| |
|
|||||| || | ||||| ||| |||| |||||||||||| |
|
|
| T |
31915270 |
caacttgggtgccaaaaccaataattgtgatgcattaga |
31915232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 31949318 - 31948880
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtaacatcaaaagatactagattgggacaatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31949318 |
aagacgtcaatccagggcaatctcttatttcaaaacattccaatggaaaatcacccttatgcacccctgtaacatcaaaagatactagattgggacagtt |
31949219 |
T |
|
| Q |
117 |
ccgtatagaaagaatcttgagtttagggaacaaatctaaggtt----tagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaagc |
212 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| ||| |||||||||||| |
|
|
| T |
31949218 |
ccatataaaaagaatcttgagtttagggaacaaatctaaggtcaaggtagtgagagaatcacaactattcccaatggacaatctgtgaataaaggaaaga |
31949119 |
T |
|
| Q |
213 |
ttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagattag |
312 |
Q |
| |
|
||||||||||||||| || || |||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
31949118 |
ttctctcttgattttgacgatcggagtaattcaaaatttctacacttgcttatgtaaagttcagtcagggatggagggtaagggatggaccttagatcag |
31949019 |
T |
|
| Q |
313 |
aacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctg |
412 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| | |||| ||||| ||| ||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31949018 |
aacaattcatcaatttcaattctttaagactggttgatccatctagcaaaccatctgggaggacatccaatgattcgcagtccttaattcttaggctctg |
31948919 |
T |
|
| Q |
413 |
caactttggcggcaaaaacaacaattttgatgcattaga |
451 |
Q |
| |
|
|||||| || | ||||| ||| |||| |||||||||||| |
|
|
| T |
31948918 |
caacttgggtgccaaaaccaataattgtgatgcattaga |
31948880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 451
Target Start/End: Original strand, 31683055 - 31683493
Alignment:
| Q |
17 |
aagacgtcaatccaggacaatctcttatttgaaaacactccaaagcaaaatcacccttatacacccctgtaacatcaaaagatactagattgggacaatc |
116 |
Q |
| |
|
|||||||||||||||| ||||||||||||| |||||| ||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| | |
|
|
| T |
31683055 |
aagacgtcaatccagggcaatctcttatttcaaaacattccaatggaaaatcacccttatgcacccctgtaacatcaaaagatactagattgggacagtt |
31683154 |
T |
|
| Q |
117 |
ccgtatagaaagaatcttgagtttagggaacaaatctaaggtt----tagtgagggaatcacaactattcccattggacaaactgcaaataaaggaaagc |
212 |
Q |
| |
|
|| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| || |||| ||| |||||||||||| |
|
|
| T |
31683155 |
ccatataaaaagaatcttgagtttagggaacaaatctaaggtcaaggtagtgagagaatcacaactattcccaatgaacaatctgtgaataaaggaaaga |
31683254 |
T |
|
| Q |
213 |
ttctctcttgattttaacaatgggagcaattagaattttctacacttacttatgtaaagatcagtcagggatgcagggtaagggaaggatcttagattag |
312 |
Q |
| |
|
||||||||||||||| || || |||| |||| || ||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||| ||||||| || |
|
|
| T |
31683255 |
ttctctcttgattttgacgatcggagtaattcaaaatttctacacttgcttatgtaaagttcagtcagggatggagggtaagggatggaccttagatcag |
31683354 |
T |
|
| Q |
313 |
aacaattcatgaattccaatcctttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctg |
412 |
Q |
| |
|
|||||||||| |||| |||| |||||||| ||| | |||| ||||| ||||||||||| |||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
31683355 |
aacaattcatcaatttcaattctttaagactggttgatccatctagcaaatcatctgggaggacatccaatgattcgcagtccttaattcttaggctctg |
31683454 |
T |
|
| Q |
413 |
caactttggcggcaaaaacaacaattttgatgcattaga |
451 |
Q |
| |
|
|||||| || | ||||| | | |||| |||||||||||| |
|
|
| T |
31683455 |
caacttgggtgccaaaaccgataattgtgatgcattaga |
31683493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 336 - 488
Target Start/End: Complemental strand, 3915650 - 3915498
Alignment:
| Q |
336 |
ttaagattgggtaatccgtctaggaaatcatctggaaggacatccaatgattcgtagtccttaattcttaggttctgcaactttggcggcaaaaacaaca |
435 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||| ||||| |||||||||| | ||| |||| |||| |||||| || | |||||| |||||| |
|
|
| T |
3915650 |
ttaagaatgggtaatccatctagcaaatcatctggatggacaaccaatgattcacatccctcaattactaggctctgcagattgtgtggcaaagacaaca |
3915551 |
T |
|
| Q |
436 |
attttgatgcattagacacgctgagtgtttgaaagaatatttcttcatcatca |
488 |
Q |
| |
|
||| |||||| ||||| || || ||||| ||| |||||||||| ||||||| |
|
|
| T |
3915550 |
attgtgatgccttagataccatgcatgtttcaaataatatttcttgatcatca |
3915498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 184
Target Start/End: Original strand, 290184 - 290269
Alignment:
| Q |
103 |
agattgggacaatcccgtatagaaagaatcttgagtttagggaacaaatctaaggt----ttagtgagggaatcacaactattccc |
184 |
Q |
| |
|
||||||| ||||| || |||| ||||||| ||||||||||||||||||| |||| | ||||||| ||||||||||||||||| |
|
|
| T |
290184 |
agattggaacaattccatatacaaagaattttgagtttagggaacaaatttaagttcaaggtagtgagtgaatcacaactattccc |
290269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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