View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_high_6 (Length: 293)
Name: NF10351_high_6
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6813110 - 6813386
Alignment:
| Q |
1 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
100 |
Q |
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| T |
6813110 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtccccattatt |
6813209 |
T |
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| Q |
101 |
tttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
200 |
Q |
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| T |
6813210 |
ttttcttgaaactgaataatcatctttgtcctgatgacgactatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
6813309 |
T |
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| Q |
201 |
tcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaag |
277 |
Q |
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| T |
6813310 |
tcgccttcgaaatttcgacaggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaag |
6813386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 6819666 - 6819942
Alignment:
| Q |
1 |
atgtttagacaaatgaaatgaacatatataagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
100 |
Q |
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| T |
6819666 |
atgtttagacaaatgaaatgaacatatagaagtttagtcaatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtt |
6819765 |
T |
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| Q |
101 |
tttgattgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtt |
200 |
Q |
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| T |
6819766 |
tttgattgaaagtgagtcatcatctttgttctgttggtgaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtt |
6819865 |
T |
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| Q |
201 |
tcgccttcgaaatttcgataggaaatgaggataggatctcttttagctatgttgttgcaaatttctacattcccaag |
277 |
Q |
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| T |
6819866 |
tcgccttcgaaatttcgatacgaaatgaggataggacatcttttagctatgttgttgcaaatgtctacattcccaag |
6819942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 39 - 277
Target Start/End: Original strand, 6834180 - 6834418
Alignment:
| Q |
39 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgctggc |
138 |
Q |
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| T |
6834180 |
caatgacactaaccaaagtattcactggatatggtagaatgaagaatagtgtctccattgtttttgattgaaagtgagtcatcatctttgttctgttcgt |
6834279 |
T |
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| Q |
139 |
gaccatgaagacaaaagaatgcctctcttttgccatatacagctgccaagaaaagaggagtttcgccttcgaaatttcgataggaaatgaggataggatc |
238 |
Q |
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| T |
6834280 |
gaccatgaagacaaaagaaagcatctctttttccatgaacagctgccaagaaaagaggagtctcgccttcaaaatttcgatatgaaatgaggatgggatc |
6834379 |
T |
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| Q |
239 |
tcttttagctatgttgttgcaaatttctacattcccaag |
277 |
Q |
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|||| | ||||| |||||||||||||||||||||||||| |
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| T |
6834380 |
tcttctggctatattgttgcaaatttctacattcccaag |
6834418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 153
Target Start/End: Original strand, 34778826 - 34778905
Alignment:
| Q |
76 |
aatgaagaatagtgtctccattgtttttg--attgaaagtgagtcatcatctttgttctgctggcgaccatgaagacaaa |
153 |
Q |
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| T |
34778826 |
aatgaagaatggtgtctccattgttttttttattgaaagtgaatcatcatctttattctgttggtgaccatgaagacaaa |
34778905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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