View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10351_low_12 (Length: 240)

Name: NF10351_low_12
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10351_low_12
NF10351_low_12
[»] chr5 (11 HSPs)
chr5 (16-240)||(32516185-32516409)
chr5 (36-79)||(43558265-43558308)
chr5 (42-79)||(21952138-21952175)
chr5 (180-240)||(27749-27809)
chr5 (94-150)||(21952119-21952175)
chr5 (93-137)||(38578974-38579018)
chr5 (93-233)||(43558188-43558328)
chr5 (37-80)||(1525429-1525472)
chr5 (93-131)||(20077293-20077331)
chr5 (93-135)||(21915654-21915696)
chr5 (93-149)||(16779450-16779506)
[»] chr7 (20 HSPs)
chr7 (140-240)||(25579438-25579538)
chr7 (184-240)||(28628297-28628353)
chr7 (24-79)||(24425960-24426015)
chr7 (152-239)||(32630422-32630509)
chr7 (41-79)||(12965814-12965852)
chr7 (93-239)||(36651762-36651908)
chr7 (175-240)||(7189600-7189665)
chr7 (183-240)||(21517693-21517750)
chr7 (183-239)||(15681215-15681271)
chr7 (175-239)||(47848524-47848588)
chr7 (93-136)||(18637345-18637388)
chr7 (93-136)||(18650780-18650823)
chr7 (37-80)||(39811744-39811787)
chr7 (177-239)||(7272891-7272953)
chr7 (93-239)||(11593728-11593874)
chr7 (41-79)||(12965730-12965768)
chr7 (93-239)||(38606773-38606919)
chr7 (24-74)||(47235545-47235595)
chr7 (190-238)||(23087472-23087520)
chr7 (20-76)||(47439053-47439109)
[»] chr8 (15 HSPs)
chr8 (175-240)||(17491993-17492058)
chr8 (93-236)||(42854375-42854518)
chr8 (37-79)||(15853932-15853974)
chr8 (93-239)||(39946625-39946771)
chr8 (93-191)||(44681492-44681590)
chr8 (34-71)||(11130401-11130438)
chr8 (22-78)||(10080340-10080396)
chr8 (113-205)||(15853882-15853974)
chr8 (175-239)||(38667405-38667469)
chr8 (37-80)||(16351176-16351219)
chr8 (93-211)||(36565637-36565755)
chr8 (34-79)||(25985328-25985373)
chr8 (34-79)||(42493751-42493796)
chr8 (175-239)||(15215639-15215703)
chr8 (36-80)||(38328258-38328302)
[»] chr4 (11 HSPs)
chr4 (152-240)||(11389547-11389635)
chr4 (24-78)||(10775861-10775915)
chr4 (93-211)||(10775818-10775936)
chr4 (174-240)||(45205215-45205281)
chr4 (25-76)||(38571146-38571197)
chr4 (152-231)||(55578858-55578937)
chr4 (93-239)||(435997-436143)
chr4 (93-239)||(27450541-27450687)
chr4 (93-143)||(30853184-30853234)
chr4 (93-193)||(1777429-1777529)
chr4 (175-239)||(31458878-31458942)
[»] chr3 (10 HSPs)
chr3 (24-78)||(28397942-28397996)
chr3 (20-78)||(50621795-50621853)
chr3 (34-80)||(55244089-55244135)
chr3 (111-192)||(55244088-55244169)
chr3 (183-234)||(43308424-43308475)
chr3 (177-239)||(38849946-38850008)
chr3 (157-239)||(43695133-43695215)
chr3 (43-80)||(11581231-11581268)
chr3 (34-79)||(44395213-44395258)
chr3 (41-78)||(48221573-48221610)
[»] chr2 (11 HSPs)
chr2 (93-231)||(6238130-6238267)
chr2 (175-239)||(41763409-41763473)
chr2 (93-239)||(451990-452136)
chr2 (24-80)||(13149100-13149156)
chr2 (20-71)||(28317537-28317588)
chr2 (93-239)||(2610296-2610442)
chr2 (93-239)||(4807360-4807506)
chr2 (34-80)||(7292775-7292821)
chr2 (182-236)||(12734562-12734616)
chr2 (93-158)||(7292756-7292821)
chr2 (175-239)||(24583974-24584038)
[»] chr1 (17 HSPs)
chr1 (34-76)||(51234405-51234447)
chr1 (31-79)||(7814251-7814299)
chr1 (93-240)||(19936290-19936437)
chr1 (24-79)||(34827541-34827596)
chr1 (37-78)||(6640918-6640959)
chr1 (23-79)||(19936310-19936366)
chr1 (93-237)||(32083115-32083259)
chr1 (24-76)||(32404967-32405019)
chr1 (183-238)||(7814322-7814377)
chr1 (93-136)||(18793459-18793502)
chr1 (162-240)||(1661263-1661341)
chr1 (93-135)||(26016233-26016275)
chr1 (30-79)||(35672476-35672525)
chr1 (34-75)||(41560228-41560269)
chr1 (180-236)||(11331435-11331491)
chr1 (180-236)||(11489456-11489512)
chr1 (179-239)||(40419493-40419553)
[»] chr6 (5 HSPs)
chr6 (152-239)||(5631645-5631732)
chr6 (157-239)||(607991-608073)
chr6 (93-239)||(5258518-5258664)
chr6 (182-240)||(28027192-28027250)
chr6 (95-239)||(10100225-10100369)
[»] scaffold0570 (1 HSPs)
scaffold0570 (93-211)||(2666-2784)
[»] scaffold0024 (1 HSPs)
scaffold0024 (175-239)||(82571-82635)


Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 32516409 - 32516185
Alignment:
Q  16 atgtcaactgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaacacccaacttgaatacgaaatggagaagtgcctcaggtg 115  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32516409 atgtcaactgtccaatataattttcccttcaactagagcggtactttcgtatcacataaaacacccaacttgaatacgaaatggagaagtgcctcaggtg 32516310  T
Q  116 ttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggctta 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  32516309 ttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctgttagaccgacgatgttgtatggaatagagtgttgggcggctta 32516210  T
Q  216 gaaccaacacgagaataaagtaagc 240  Q
    |||| ||||||||||||||||||||    
T  32516209 gaactaacacgagaataaagtaagc 32516185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 36 - 79
Target Start/End: Original strand, 43558265 - 43558308
Alignment:
Q  36 ttttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||||||||||||||||| ||||||||||||||||    
T  43558265 ttttcccttcaacttgagcggtactttagtatcacataaaacac 43558308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 21952175 - 21952138
Alignment:
Q  42 cttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  21952175 cttcaacttgagcggtactttcgcatcacataaaacac 21952138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 27749 - 27809
Alignment:
Q  180 gacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    ||||||||||||||| |  ||||||||||||| | |||||||||| |||||| ||||||||    
T  27749 gacgatgttgtatggtacggagtgttgggcggttaagaaccaacatgagaattaagtaagc 27809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 150
Target Start/End: Original strand, 21952119 - 21952175
Alignment:
Q  94 aaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaag 150  Q
    |||||||| ||||||||| |||||||||||||||| ||||||||  |||| ||||||    
T  21952119 aaatggaggagtgcctcatgtgttttatgtgatgcgaaagtaccgctcaagttgaag 21952175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 38579018 - 38578974
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacc 137  Q
    ||||||||| ||||||||| |||||||||||||| ||||||||||    
T  38579018 gaaatggaggagtgcctcatgtgttttatgtgatacaaaagtacc 38578974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 233
Target Start/End: Complemental strand, 43558328 - 43558188
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||  |||| | |||||||||||||| | ||||||||  |||| |||||| ||||| |  |  ||||| || | |||||||| |||||||||    
T  43558328 gaaatggagaatagcctaaagtgttttatgtgatactaaagtaccgctcaagttgaagggaaaaattcaagggacaactgtaagaccgacaatgttgtat 43558229  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataa 233  Q
     ||  | ||||| ||||||   |||||||||||||||||||    
T  43558228 agagcatagtgtagggcggtgaagaaccaacacgagaataa 43558188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 1525472 - 1525429
Alignment:
Q  37 tttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    |||||||||||||| ||||||||||| | |||||||||||||||    
T  1525472 tttcccttcaacttaagcggtacttttgcatcacataaaacacc 1525429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 20077331 - 20077293
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaa 131  Q
    |||||||||||| ||||||||||||||||||||| ||||    
T  20077331 gaaatggagaagagcctcaggtgttttatgtgatacaaa 20077293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 21915654 - 21915696
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagta 135  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||    
T  21915654 gaaatggaggagtgcctcagatgttttatgcgatgcaaaagta 21915696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 149
Target Start/End: Original strand, 16779450 - 16779506
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaa 149  Q
    |||||||||||| | ||||| ||||||||||||| | |||||||| ||||| |||||    
T  16779450 gaaatggagaagagactcagatgttttatgtgatacgaaagtaccattcaagttgaa 16779506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 140 - 240
Target Start/End: Complemental strand, 25579538 - 25579438
Alignment:
Q  140 tcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||| |||||| |||||||||| ||||||||| | |||||| |||||||||||||||  || |||||||||| | |||||||||||||||||||| ||||    
T  25579538 tcaagttgaagggaaaattctatcggacagctgtaagaccggcgatgttgtatggaacggaatgttgggcggttaagaaccaacacgagaataaaataag 25579439  T
Q  240 c 240  Q
    |    
T  25579438 c 25579438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 28628353 - 28628297
Alignment:
Q  184 atgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    ||||||||||||| | |||||||||||| | ||||||||||||||||||||||||||    
T  28628353 atgttgtatggaacaaagtgttgggcggttgagaaccaacacgagaataaagtaagc 28628297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 24425960 - 24426015
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||| ||||||||||||||||| || ||||||| | |||||||||||||||    
T  24425960 tgtccaatagaattttcccttcaacttaagtggtacttacatatcacataaaacac 24426015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 32630422 - 32630509
Alignment:
Q  152 gaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||| ||||| |||||| | || |||||||| ||||||||||| |  ||||| ||||||| | ||||||||||||||| |||||||||    
T  32630422 gaaagttctatcggacatcaatcagaccgacaatgttgtatggtacggagtgctgggcggttaagaaccaacacgagagtaaagtaag 32630509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 12965852 - 12965814
Alignment:
Q  41 ccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  12965852 ccttcaacttgagtggtactttcgtatcacataaaacac 12965814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 36651762 - 36651908
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| |||||||| ||  ||||| || ||||||||    
T  36651762 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcaatccgaccggcgttgttgtat 36651861  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||| | |||  ||||| |||||| |||||||    
T  36651862 ggtacggagtgttgggcggttaagagtcaacatgagaatcaagtaag 36651908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 7189665 - 7189600
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    |||||||||||||||||||| | ||||||||||| || | ||||||||||| | ||| ||||||||    
T  7189665 agaccgacgatgttgtatggtacagagtgttgggtggttaagaaccaacacaaaaatcaagtaagc 7189600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 183 - 240
Target Start/End: Complemental strand, 21517750 - 21517693
Alignment:
Q  183 gatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    |||||||||||||| | |||||| ||||| | |||||||||||||||||||| |||||    
T  21517750 gatgttgtatggaacatagtgtttggcggttaagaaccaacacgagaataaaataagc 21517693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 15681215 - 15681271
Alignment:
Q  183 gatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||||||| |||||||||||||||| | ||| ||||||||||| | |||||||    
T  15681215 gatgttgtatggtatagagtgttgggcggttaagagccaacacgagactcaagtaag 15681271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 47848524 - 47848588
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||| ||| || ||||||| |||||||||| || | |||||||||||||||||||| ||||    
T  47848524 agaccgactatgatgaatggaatggagtgttgggtggttaagaaccaacacgagaataaaataag 47848588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 18637345 - 18637388
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtac 136  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||    
T  18637345 gaaatggaggagtgcctcatgtgttttatgtgatacaaaagtac 18637388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Original strand, 18650780 - 18650823
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtac 136  Q
    ||||||||| ||||||||| |||||||||||||| |||||||||    
T  18650780 gaaatggaggagtgcctcatgtgttttatgtgatacaaaagtac 18650823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 39811787 - 39811744
Alignment:
Q  37 tttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    |||| ||||||||||||| ||||||| |||||||||||||||||    
T  39811787 tttctcttcaacttgagcagtacttttgtatcacataaaacacc 39811744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 7272891 - 7272953
Alignment:
Q  177 accgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||| ||||||||||  | |||||||||||||| | ||| ||||||||||||| |||||||    
T  7272891 accgacaatgttgtatgatacagagtgttgggcggttgagagccaacacgagaatcaagtaag 7272953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 11593728 - 11593874
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||  |||||||||  | || |||||  |||| ||||| |||||| |  || ||||| || ||||||||    
T  11593728 gaaatggagaagagcctcaggtgttttgtgcgataaaaaagtaccacttaagttgaaaggaaagttctatcggacaacagttcgaccggcgttgttgtat 11593827  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||| ||| | |||  ||||| |||||| |||||||    
T  11593828 ggtacggagtgttggacggttaagagtcaacatgagaatcaagtaag 11593874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 79
Target Start/End: Complemental strand, 12965768 - 12965730
Alignment:
Q  41 ccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||| |||| ||||||||||||||||||||    
T  12965768 ccttcaacttgagtggtattttcgtatcacataaaacac 12965730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 38606773 - 38606919
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||| ||||||||| || |||   ||||||||  | ||  ||||  |||| ||||| |||||| |  | |||||| | |||||||||    
T  38606773 gaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaagctgaaaggaaagttctatcggacaacagtcagaccggcaatgttgtat 38606872  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||| | ||| ||||||||||| |||||||||    
T  38606873 ggtacggagtgttgggcggttaagagccaacacgagagtaaagtaag 38606919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 47235595 - 47235545
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataa 74  Q
    ||||||||| |||||| |||||||||| ||||||||||| |||||| ||||    
T  47235595 tgtccaataaaattttaccttcaacttaagcggtacttttgtatcatataa 47235545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 238
Target Start/End: Complemental strand, 23087520 - 23087472
Alignment:
Q  190 tatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaa 238  Q
    ||||||| |||||||||| | | | ||||||||||||||||||||||||    
T  23087520 tatggaacagagtgttggacagttaagaaccaacacgagaataaagtaa 23087472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 47439109 - 47439053
Alignment:
Q  20 caactgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaa 76  Q
    |||| |||||||| |||||  |||| ||||| || ||||||||||||||||||||||    
T  47439109 caacggtccaataaaatttctcctttaacttaagtggtactttcgtatcacataaaa 47439053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 17492058 - 17491993
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    |||||| |||||||||||| ||| ||||||||||||| | ||||||||||||||||||||||||||    
T  17492058 agaccggcgatgttgtatgcaatggagtgttgggcggttaagaaccaacacgagaataaagtaagc 17491993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 236
Target Start/End: Complemental strand, 42854518 - 42854375
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||| ||||||| || |||   ||||||||  | ||  ||||  |||||||||| ||||||||  | |||||||| |||||||||    
T  42854518 gaaatggagaagagcctcatgtgttttgtgcgataagaaagtaccacttaagctgaaaggaaaattctatcggacagcagtcagaccgacaatgttgtat 42854419  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagt 236  Q
    || |  ||||||||||||| | ||| ||||||||||| ||||||    
T  42854418 ggtacggagtgttgggcggttaagagccaacacgagagtaaagt 42854375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 79
Target Start/End: Original strand, 15853932 - 15853974
Alignment:
Q  37 tttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||||||| |||||||||||||||||||||||||    
T  15853932 tttcccttcaacttgagtggtactttcgtatcacataaaacac 15853974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 39946625 - 39946771
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||| ||||||||| || |||   ||||||||  | ||||||||  |||| ||||| ||||||||  | || ||| |||||||||||    
T  39946625 gaaatggagaagagccttaggtgttttgtgcgataagaaagtaccacttaaattgaaaggaaagttctatcggacagcagtcaggccggcgatgttgtat 39946724  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  || |||||||||| | |||  |||||||||||| |||||||    
T  39946725 ggtacggaatgttgggcggttaagagtcaacacgagaatcaagtaag 39946771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 191
Target Start/End: Complemental strand, 44681590 - 44681492
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgta 191  Q
    |||||||||||| || ||| ||||| |||||||| | ||| ||||  ||||||||||| ||||||| || |||||| |||  |||||| ||||||||||    
T  44681590 gaaatggagaagagcatcaagtgttctatgtgatacgaaaataccactcaaattgaagtgaaaattttatcggacaactacaagaccggcgatgttgta 44681492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 34 - 71
Target Start/End: Original strand, 11130401 - 11130438
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcaca 71  Q
    |||||||||||||||||||| |||||||||||||||||    
T  11130401 aattttcccttcaacttgagaggtactttcgtatcaca 11130438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 10080340 - 10080396
Alignment:
Q  22 actgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    ||||||||||| || ||||  ||||||||||| | ||||||||||||||||||||||    
T  10080340 actgtccaataaaaatttcaattcaacttgagtgatactttcgtatcacataaaaca 10080396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 205
Target Start/End: Complemental strand, 15853974 - 15853882
Alignment:
Q  113 gtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgtt 205  Q
    |||||||||||||| | ||||||||  |||| |||||| |||| || || || | || ||| |||| ||||||| ||||||||||||||||||    
T  15853974 gtgttttatgtgatacgaaagtaccactcaagttgaagggaaacttttatcgcatagatataagactgacgatgctgtatggaatagagtgtt 15853882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 38667405 - 38667469
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    ||||| ||||| || ||||||||||||||||| | |  | |||||||||||||||||||||||||    
T  38667405 agaccaacgatattttatggaatagagtgttgagtgattaagaaccaacacgagaataaagtaag 38667469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 80
Target Start/End: Complemental strand, 16351219 - 16351176
Alignment:
Q  37 tttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    ||||||||||||||||||| |||||||  |||||||||||||||    
T  16351219 tttcccttcaacttgagcgttactttcacatcacataaaacacc 16351176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 36565755 - 36565637
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| ||||||||  | |||||| || ||||||||    
T  36565755 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcagtcagaccggcgttgttgtat 36565656  T
Q  193 ggaatagagtgttgggcgg 211  Q
    || |  |||||||||||||    
T  36565655 ggtacggagtgttgggcgg 36565637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 25985373 - 25985328
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||| |||||||||||||||| || |||| |||||||||    
T  25985373 aattttccctttaacttgagcggtacttccgcatcatataaaacac 25985328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 42493751 - 42493796
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    |||||||| |||| ||||||| |||||||||| |||||||||||||    
T  42493751 aattttccattcagcttgagctgtactttcgtgtcacataaaacac 42493796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 15215703 - 15215639
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||  ||||||||||| |  ||||||||||||| | ||| ||||||||||| |||||||||    
T  15215703 agaccgaaaatgttgtatggtacggagtgttgggcggttaagagccaacacgagagtaaagtaag 15215639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 38328258 - 38328302
Alignment:
Q  36 ttttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    ||||||||||||||| | ||||| |||| ||||||||||||||||    
T  38328258 ttttcccttcaacttaaacggtattttcatatcacataaaacacc 38328302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 11389547 - 11389635
Alignment:
Q  152 gaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    ||||||| || ||||||| | | |||||||| |||||||||||||   |||||||||||| | ||||||||| ||||||||||||||||    
T  11389547 gaaaattttatcggacagttgtaagaccgacaatgttgtatggaaagtagtgttgggcggttaagaaccaactcgagaataaagtaagc 11389635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 10775861 - 10775915
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    ||||||||| |||||||||||||||||||| ||| |||||| |||||||||||||    
T  10775861 tgtccaataaaattttcccttcaacttgaggggtgctttcgcatcacataaaaca 10775915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 10775936 - 10775818
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    ||||||||| ||||||| |  ||||||||||||||| |||| |||  |||| |||||| ||||||| ||  ||||| |  | ||||| | ||||||||||    
T  10775936 gaaatggaggagtgccttacttgttttatgtgatgcgaaagcacccctcaagttgaagggaaaattttattggacaacggtaagaccaatgatgttgtat 10775837  T
Q  193 ggaatagagtgttgggcgg 211  Q
    || | ||||||||||||||    
T  10775836 gggaaagagtgttgggcgg 10775818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 45205281 - 45205215
Alignment:
Q  174 tagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    ||||||| ||||||||||||| |  ||||||||||| | | ||||||||||||||||| ||||||||    
T  45205281 tagaccggcgatgttgtatggtacggagtgttgggcagttaagaaccaacacgagaatcaagtaagc 45205215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 38571146 - 38571197
Alignment:
Q  25 gtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaa 76  Q
    |||||||  ||||||||| ||||||||||| ||||||||| |||||||||||    
T  38571146 gtccaatgaaattttcccatcaacttgagcagtactttcgcatcacataaaa 38571197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 55578858 - 55578937
Alignment:
Q  152 gaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaat 231  Q
    |||||||||| |||||| |  | ||||| || ||||||||||| ||  |||||||||||| | |||||||||||||||||    
T  55578858 gaaaattctatcggacaacagtcagaccaacaatgttgtatggtatgaagtgttgggcggttaagaaccaacacgagaat 55578937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 435997 - 436143
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| ||||||||  |  ||||| || ||||||||    
T  435997 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcagtccgaccggcgttgttgtat 436096  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||| | |||  ||||| |||||| |||||||    
T  436097 ggtacggagtgttgggcggttaagagtcaacatgagaatcaagtaag 436143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 27450687 - 27450541
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||| ||||||| || |||   ||||||||  | ||  ||||  |||||||||| | |||| |  | |||||||| |||||||||    
T  27450687 gaaatggagaagagcctcaagtgttttgtgcgataagaaagtaccacttaagctgaaaggaaaattctatcagacaacagtcagaccgacaatgttgtat 27450588  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||| | | ||| ||||||||||| |||||||||    
T  27450587 ggtacggagtgttgggcagttaagagccaacacgagagtaaagtaag 27450541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 143
Target Start/End: Original strand, 30853184 - 30853234
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaa 143  Q
    ||||||||  || ||||||||||||||||||||| |||||||||| |||||    
T  30853184 gaaatggaagagggcctcaggtgttttatgtgatacaaaagtaccgttcaa 30853234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 193
Target Start/End: Complemental strand, 1777529 - 1777429
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| ||||||||  | ||||||||| ||||||||    
T  1777529 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcagtcagaccgacgttgttgtat 1777430  T
Q  193 g 193  Q
    |    
T  1777429 g 1777429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 31458878 - 31458942
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||| ||||||| ||||| |  ||||||||||| | | ||||||||||||| |||||||||||    
T  31458878 agaccggcgatgttttatggtacggagtgttgggcagttaagaaccaacacgaaaataaagtaag 31458942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 28397942 - 28397996
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    ||||||||| |||||||||||||||||||||| |||||||| || ||||||||||    
T  28397942 tgtccaataaaattttcccttcaacttgagcgatactttcgcattacataaaaca 28397996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 78
Target Start/End: Original strand, 50621795 - 50621853
Alignment:
Q  20 caactgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    ||||| ||||||||||  ||||||| |||||||| |||||| |||||||||||||||||    
T  50621795 caactatccaatataacgttccctttaacttgagtggtactctcgtatcacataaaaca 50621853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 55244135 - 55244089
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    |||||||||||||||||||| |||||||| |||||| ||||||||||    
T  55244135 aattttcccttcaacttgagtggtacttttgtatcaaataaaacacc 55244089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 55244088 - 55244169
Alignment:
Q  111 aggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    ||||||||||| |||| ||||||||||  |||| |||||| ||||||| || | ||||||| | |||||||| |||||||||    
T  55244088 aggtgttttatttgatacaaaagtaccactcaagttgaagggaaaattttatctgacagctgtaagaccgacaatgttgtat 55244169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 234
Target Start/End: Original strand, 43308424 - 43308475
Alignment:
Q  183 gatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaa 234  Q
    |||||||||||| || |||||||||||||   ||||||||||||||||||||    
T  43308424 gatgttgtatgggatggagtgttgggcggtaaagaaccaacacgagaataaa 43308475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 177 - 239
Target Start/End: Original strand, 38849946 - 38850008
Alignment:
Q  177 accgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||||||||||||| | | |||||||||||| | |||  |||||||||||| |||||||    
T  38849946 accgacgatgttgtatggtacaaagtgttgggcggttaagagtcaacacgagaatcaagtaag 38850008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Complemental strand, 43695215 - 43695133
Alignment:
Q  157 ttctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    ||||| ||||||||  |||||||| ||||||||||||| |  |||||||||| || | ||||  ||||||||||| |||||||    
T  43695215 ttctatcggacagcagttagaccggcgatgttgtatggtacggagtgttgggtggttgagaattaacacgagaatcaagtaag 43695133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 80
Target Start/End: Complemental strand, 11581268 - 11581231
Alignment:
Q  43 ttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  11581268 ttcaacttgagcgatactttcgaatcacataaaacacc 11581231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 79
Target Start/End: Complemental strand, 44395258 - 44395213
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||||||| ||||||| ||| ||| ||||||||||||||||    
T  44395258 aattttcccttcatcttgagcagtatttttgtatcacataaaacac 44395213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 48221610 - 48221573
Alignment:
Q  41 ccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  48221610 ccttcaacttgagcagtactttcgtatcacacaaaaca 48221573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 93 - 231
Target Start/End: Complemental strand, 6238267 - 6238130
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||| ||||||| ||||||  |||| ||||  | || ||||| ||||||||||| |||||| |  |||||| |||||||||||||    
T  6238267 gaaatggagaagagcctcatgtgttttgtgtgataaaaaa-taccacttaagttgaaaagaaaattctatcggacaacagttagactgacgatgttgtat 6238169  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaat 231  Q
    || |  |||||||||| || | |||  ||||||||||||    
T  6238168 ggtacggagtgttgggtggttaagagtcaacacgagaat 6238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 41763473 - 41763409
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||| | ||||||||||| | |||||||||||||| | ||||||||||||||| |||||||||    
T  41763473 agaccggcaatgttgtatggtacagagtgttgggcggttaagaaccaacacgagagtaaagtaag 41763409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 452136 - 451990
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| ||||||||  |  |||||||| ||||||||    
T  452136 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcagtccgaccgacgttgttgtat 452037  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||| | |||  ||||| |||||| |||||||    
T  452036 ggtacggagtgttgggcggttaagagtcaacatgagaatcaagtaag 451990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 13149156 - 13149100
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    |||||||||||||||||| || |||||||| ||||||||| ||||| || |||||||    
T  13149156 tgtccaatataattttccttttaacttgagtggtactttcttatcatatgaaacacc 13149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 28317588 - 28317537
Alignment:
Q  20 caactgtccaatataattttcccttcaacttgagcggtactttcgtatcaca 71  Q
    |||||||| |||| ||||| ||||||||||| |||||| |||||||||||||    
T  28317588 caactgtctaataaaatttgcccttcaactttagcggtgctttcgtatcaca 28317537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 2610296 - 2610442
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| ||||||||||||||||| |||   ||||||||  | || |||||  |||| ||||| |||||| |  | |||| | || ||||||||    
T  2610296 gaaatggagaagagcctcaggtgttttatgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacaacagtcagactggcgttgttgtat 2610395  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||| | |||  ||||| |||||| |||||||    
T  2610396 ggtacggagtgttgggcggttaagagtcaacatgagaatcaagtaag 2610442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Original strand, 4807360 - 4807506
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| | |||||||||||| || |||   |||||||| || || |||||  |||| ||||| ||||||||  |  |||||||| ||||||||    
T  4807360 gaaatggagaagagtctcaggtgttttgtgcgataagaaagtaccatttaagttgaaaggaaagttctatcggacagcagtccgaccgacgttgttgtat 4807459  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |  | ||||||||| |||| | |||  ||||| |||||| |||||||    
T  4807460 gacacagagtgttgagcggttaagagtcaacatgagaattaagtaag 4807506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 80
Target Start/End: Complemental strand, 7292821 - 7292775
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaacacc 80  Q
    ||||||| ||||||||||||| ||||||||| |||| ||||||||||    
T  7292821 aattttctcttcaacttgagcagtactttcgcatcatataaaacacc 7292775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 236
Target Start/End: Original strand, 12734562 - 12734616
Alignment:
Q  182 cgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagt 236  Q
    ||||||||||||| | |||||||||||||| ||||| |||||| |||||| ||||    
T  12734562 cgatgttgtatggtacagagtgttgggcggtttagagccaacatgagaatcaagt 12734616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 7292756 - 7292821
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaatt 158  Q
    |||||| || |||| |||||||||||||| |||||| |||||||   |||| ||||||||||||||    
T  7292756 gaaatgaaggagtgactcaggtgttttatatgatgcgaaagtactgctcaagttgaagagaaaatt 7292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 24584038 - 24583974
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||||||||||||||| | | | |||||||||| | |||  |||||||||||| |||||||    
T  24584038 agaccgacgatgttgtatggtacaaaatgttgggcggttaagagtcaacacgagaatcaagtaag 24583974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 34 - 76
Target Start/End: Complemental strand, 51234447 - 51234405
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaaa 76  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  51234447 aattttcccttcaacttgagcggtgctttcgtatcacataaaa 51234405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 31 - 79
Target Start/End: Complemental strand, 7814299 - 7814251
Alignment:
Q  31 tataattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    ||||||||| |||||||||||||||||| |||| |||||||||||||||    
T  7814299 tataatttttccttcaacttgagcggtattttcatatcacataaaacac 7814251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 240
Target Start/End: Original strand, 19936290 - 19936437
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||| |||  ||||| ||||||||||||||   ||||||||  | ||| ||||  ||||||| || ||||||||  |||||||  | ||||| ||     
T  19936290 gaaatggataagaacctcaagtgttttatgtgataagaaagtaccgcttaaaatgaaaggaaaattatatcggacagcagttagaccagcaatgttatag 19936389  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    || |||||||||||||||| | |||||||||| |||||| || |||||    
T  19936390 ggtatagagtgttgggcggttaagaaccaacatgagaatcaaataagc 19936437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 34827541 - 34827596
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    |||||||||||||||||| ||||| || ||| |||||||| |||||||||||||||    
T  34827541 tgtccaatataattttcctttcaatttaagcagtactttcttatcacataaaacac 34827596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 37 - 78
Target Start/End: Complemental strand, 6640959 - 6640918
Alignment:
Q  37 tttcccttcaacttgagcggtactttcgtatcacataaaaca 78  Q
    |||||||||||||| ||||||||||||| |||||||||||||    
T  6640959 tttcccttcaacttaagcggtactttcggatcacataaaaca 6640918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 79
Target Start/End: Complemental strand, 19936366 - 19936310
Alignment:
Q  23 ctgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    |||||| |||||||||||| ||||  || |||||||||||| |||||||||||||||    
T  19936366 ctgtccgatataattttcctttcattttaagcggtactttcttatcacataaaacac 19936310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 237
Target Start/End: Complemental strand, 32083259 - 32083115
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||| |||| |||   ||||||||  | ||  ||||  |||| ||||| | |||| |  | |||||||| |||||||||    
T  32083259 gaaatggagaagagcctcaggtgttctatgcgataagaaagtaccacttaagctgaaaggaaagttctatcagacaacagtcagaccgacaatgttgtat 32083160  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagta 237  Q
    || | |||||||||||||| | |||  |||||||||| |||||||    
T  32083159 ggtacagagtgttgggcggttaagagtcaacacgagagtaaagta 32083115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 32404967 - 32405019
Alignment:
Q  24 tgtccaatataattttcccttcaacttgagcggtactttcgtatcacataaaa 76  Q
    ||||| ||| |||||||||||||||||||| ||| |||||||||| |||||||    
T  32404967 tgtccgatagaattttcccttcaacttgagtggtcctttcgtatcgcataaaa 32405019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 238
Target Start/End: Original strand, 7814322 - 7814377
Alignment:
Q  183 gatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaa 238  Q
    |||||||||||||| ||| ||||||  || | ||||||||||||||||||||||||    
T  7814322 gatgttgtatggaacagaatgttggatggttaagaaccaacacgagaataaagtaa 7814377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 18793502 - 18793459
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtac 136  Q
    ||||||||| |||| ||||||||||||||||||||| |||||||    
T  18793502 gaaatggaggagtgtctcaggtgttttatgtgatgcgaaagtac 18793459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 240
Target Start/End: Original strand, 1661263 - 1661341
Alignment:
Q  162 ccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    |||||||||  | ||||| ||||| |||||||| |||||| |||||||||   | |||||||||||||||||| |||||    
T  1661263 ccggacagcagtaagaccaacgatattgtatgggatagagcgttgggcggtgaaaaaccaacacgagaataaaataagc 1661341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 135
Target Start/End: Original strand, 26016233 - 26016275
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagta 135  Q
    ||||||||| |||| ||||||||||||||||||||| ||||||    
T  26016233 gaaatggaggagtgtctcaggtgttttatgtgatgctaaagta 26016275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 35672525 - 35672476
Alignment:
Q  30 atataattttcccttcaacttgagcggtactttcgtatcacataaaacac 79  Q
    |||||||||||| ||||||||||| | |||| | ||||||||||||||||    
T  35672525 atataattttcctttcaacttgagtgctactattgtatcacataaaacac 35672476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 75
Target Start/End: Complemental strand, 41560269 - 41560228
Alignment:
Q  34 aattttcccttcaacttgagcggtactttcgtatcacataaa 75  Q
    |||||||| |||||||| |||||||||||| |||||||||||    
T  41560269 aattttcctttcaacttaagcggtactttcttatcacataaa 41560228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 11331491 - 11331435
Alignment:
Q  180 gacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagt 236  Q
    ||||||||||||||| | ||||||||| ||||||  |||||||||| ||||| ||||    
T  11331491 gacgatgttgtatggtacagagtgttgtgcggctaggaaccaacacaagaatcaagt 11331435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 11489512 - 11489456
Alignment:
Q  180 gacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagt 236  Q
    ||||||||||||||| | ||||||||| ||||||  |||||||||| ||||| ||||    
T  11489512 gacgatgttgtatggtacagagtgttgtgcggctaggaaccaacacaagaatcaagt 11489456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 239
Target Start/End: Original strand, 40419493 - 40419553
Alignment:
Q  179 cgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    ||||||||||||| |||| ||||||||||| ||   |||||||||||||  ||||||||||    
T  40419493 cgacgatgttgtacggaacagagtgttgggtggtaaagaaccaacacgaacataaagtaag 40419553  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 152 - 239
Target Start/End: Original strand, 5631645 - 5631732
Alignment:
Q  152 gaaaattctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    |||||||||| |||||| |  | |||||||| ||||||||||| || ||||||||||||| | ||| ||||| ||||| |||||||||    
T  5631645 gaaaattctatcggacaacagtcagaccgacaatgttgtatggtatggagtgttgggcggttaagagccaacgcgagagtaaagtaag 5631732  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 607991 - 608073
Alignment:
Q  157 ttctaccggacagctattagaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    ||||| ||||||||  | |||||| | ||||||||| | |  ||||||||||||| | ||| |||||||||||||||||||||    
T  607991 ttctatcggacagcagtcagaccggcaatgttgtattgtacggagtgttgggcggttaagagccaacacgagaataaagtaag 608073  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 239
Target Start/End: Complemental strand, 5258664 - 5258518
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||| ||||||| || ||||  ||||||||  | ||  ||||  |||| ||||| |||||| |  | |||||| | |||||||||    
T  5258664 gaaatggagaagagcctcatgtgttttttgcgatgagaaagtaccacttaagctgaaaggaaagttctatcggacaacagtcagaccggcaatgttgtat 5258565  T
Q  193 ggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    || |  ||||||||||||||  ||| |||||||||||  ||||||||    
T  5258564 ggtacggagtgttgggcggcgaagagccaacacgagagcaaagtaag 5258518  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 28027250 - 28027192
Alignment:
Q  182 cgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaagc 240  Q
    ||||||||||||| || |||||||||| || | |||||||||| |||||| ||||||||    
T  28027250 cgatgttgtatggtatggagtgttgggaggttaagaaccaacatgagaatcaagtaagc 28027192  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 239
Target Start/End: Complemental strand, 10100369 - 10100225
Alignment:
Q  95 aatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtatgg 194  Q
    |||||||||| |||||| ||||||| || |||   ||||||||  | || |||||  |||| ||||| |||||||   | ||||||||||||||||||||    
T  10100369 aatggagaagagcctcatgtgttttgtgagataagaaagtaccacttaagttgaaaggaaagttctatcggacagtagtcagaccgacgatgttgtatgg 10100270  T
Q  195 aatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
     |  |||||||||| || | ||| |||| |||||| | |||||||    
T  10100269 tacggagtgttgggaggttaagagccaagacgagagtcaagtaag 10100225  T

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Target: scaffold0570 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 211
Target Start/End: Complemental strand, 2784 - 2666
Alignment:
Q  93 gaaatggagaagtgcctcaggtgttttatgtgatgcaaaagtacctttcaaattgaagagaaaattctaccggacagctattagaccgacgatgttgtat 192  Q
    |||||||||||| |||||||||||||| || |||   ||||||||  | || |||||  |||| ||||| ||||||||  | |||| |||| ||||||||    
T  2784 gaaatggagaagagcctcaggtgttttgtgcgataagaaagtaccacttaagttgaaaggaaagttctatcggacagcagtcagactgacgttgttgtat 2685  T
Q  193 ggaatagagtgttgggcgg 211  Q
    || || |||||||||||||    
T  2684 ggtatggagtgttgggcgg 2666  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 175 - 239
Target Start/End: Original strand, 82571 - 82635
Alignment:
Q  175 agaccgacgatgttgtatggaatagagtgttgggcggcttagaaccaacacgagaataaagtaag 239  Q
    ||||||||||| |||||||| |  ||||||||||||| | ||| |||||| |||||| |||||||    
T  82571 agaccgacgatcttgtatggtacggagtgttgggcggttaagagccaacatgagaatcaagtaag 82635  T

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