View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_low_13 (Length: 238)
Name: NF10351_low_13
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 2564647 - 2564876
Alignment:
| Q |
1 |
catactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2564647 |
catactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatc |
2564746 |
T |
|
| Q |
101 |
aaacttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggag |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2564747 |
aaagttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctatagttggag |
2564846 |
T |
|
| Q |
201 |
gccctgattttaatgaccaatttgatgatg |
230 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
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| T |
2564847 |
gccctgattttaatgaccaatttaatgatg |
2564876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 2574541 - 2574761
Alignment:
| Q |
1 |
catactaggtaacaatcccatgaagatgtcatacatggtgggatatggaagtaaatatccaaagcaattacatcacagaggttcttccatcccttcaatc |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2574541 |
catactaggaaacaatcccatgaagatgtcatatatggtgggatatgggagtaaatatccaaaacaattacatcacagaggttcttccatcccttcaatc |
2574640 |
T |
|
| Q |
101 |
aaacttcaccagaccaaagtgggttgcaatgatggttacacagattatttctattcctctaatccaaatcctaatattcatgtgggtgctattgttggag |
200 |
Q |
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||| ||||||||||||||||||||||||||||||| | | | ||||||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574641 |
aaagttcaccagaccaaagtgggttgcaatgatggccaatcgaactatttctcatcatctaatccaaatcctaatattcatgtgggtgctattgttggag |
2574740 |
T |
|
| Q |
201 |
gccctgattttaatgaccaat |
221 |
Q |
| |
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| || ||| ||||||||||| |
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| T |
2574741 |
gaccaaattctaatgaccaat |
2574761 |
T |
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