View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_low_14 (Length: 236)
Name: NF10351_low_14
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_14 |
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| [»] chr8 (6 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 33041459 - 33041237
Alignment:
| Q |
14 |
gttatgagtaactgaatgattatatttgtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattgg |
113 |
Q |
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| T |
33041459 |
gttatgagtaactaaatggttatatttgtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattgg |
33041360 |
T |
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| Q |
114 |
tgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatatggagcaa |
213 |
Q |
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| T |
33041359 |
tgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaactcaaggggataaaaaatggaataggtagcatatggagcaa |
33041260 |
T |
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| Q |
214 |
gcatatgctctgtcggtcaaatt |
236 |
Q |
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| T |
33041259 |
gcatatgttctgtcggtcaaatt |
33041237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 160
Target Start/End: Complemental strand, 33015931 - 33015808
Alignment:
| Q |
36 |
tatttgtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaacaga |
135 |
Q |
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| T |
33015931 |
tatttgtttggttatcaaaagtcttttcctttgtatttttattatgatcagat-tttagacttgtgcatttggattggtgcagttttgtgttgcgacaga |
33015833 |
T |
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| Q |
136 |
gtgtggaaacatgtcatcgaaaagc |
160 |
Q |
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| T |
33015832 |
gtttggaaacatggcattgaaaagc |
33015808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 83 - 206
Target Start/End: Complemental strand, 33020268 - 33020145
Alignment:
| Q |
83 |
tcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaacagagtgtggaaacatgtcatcgaaaagcttaggccgcaaattgaagggga |
182 |
Q |
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| T |
33020268 |
tcagaaatttagaagagtgcatttagattggagcagttttgtgttgcgacgcagtgtggaagcatgtcattgaaaatcatagtctgcaaactcaagggca |
33020169 |
T |
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| Q |
183 |
taaaaaatggaataggtagcatat |
206 |
Q |
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| T |
33020168 |
tgaaaaatcgactaggtagcatat |
33020145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 152
Target Start/End: Complemental strand, 33030733 - 33030590
Alignment:
| Q |
9 |
catcagttatgagtaactgaatgattatatttgtctggttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctgg |
108 |
Q |
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| T |
33030733 |
catctgttatgaggaactaaatgtttatatttgtttagttatcaaaagtctttttctatgtattttagttacaatcagaaatttagaattgtacgtttgg |
33030634 |
T |
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| Q |
109 |
attggtgcagttttatgttgcaacagagtgtggaaacatgtcat |
152 |
Q |
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| T |
33030633 |
attggtgcagttttgtgttgctacggagtttggaaacaagtcat |
33030590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 46 - 132
Target Start/End: Complemental strand, 33026354 - 33026270
Alignment:
| Q |
46 |
gttatcacgagtctttgcctttgtatttttgttaatgtcagaaatttagaagcttgcatctggattggtgcagttttatgttgcaac |
132 |
Q |
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| T |
33026354 |
gttaccacgagtctttgcctttgtattttggttaggataagaaatttagaagtgtgcat-tggatt-gtgcagttttgtgttgcaac |
33026270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 206
Target Start/End: Original strand, 32828584 - 32828651
Alignment:
| Q |
139 |
tggaaacatgtcatcgaaaagcttaggccgcaaattgaaggggataaaaaatggaataggtagcatat |
206 |
Q |
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| T |
32828584 |
tggaaacatgtcattcaaaagtatagtccgcgaactcaaggggatgaaaaatggaataggtagcatat |
32828651 |
T |
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