View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_low_16 (Length: 227)
Name: NF10351_low_16
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_16 |
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| [»] chr8 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0479 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 33040902 - 33041128
Alignment:
| Q |
1 |
ctatccatacacataaaggaaagagaacataaaaaacatgaccgaaaagaataatttggattagaccagaaagtgggtgaaataattgattacctgcttc |
100 |
Q |
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| T |
33040902 |
ctatccatacacataaaggaaagagaacataaaaaacatgacagaaaagaataattcggattagaccagaaagtgggtgaaataattgattacctgcttc |
33041001 |
T |
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| Q |
101 |
actgaaataggaaatgtgatccttccacattgttgaggagtcttgatgatctctaacatggcggacctccatgatttacatactgaagcacaaaagataa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33041002 |
actgaaataggaaatgtgatccttccacattgttgaggagtcttgacgatctctaatgtggcggacctccatgatttacatactgaagcacaaaagataa |
33041101 |
T |
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| Q |
201 |
caacagcacgtgcaggccaagatgtct |
227 |
Q |
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|||||||||||||||||||| |||||| |
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| T |
33041102 |
caacagcacgtgcaggccaaaatgtct |
33041128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 33025822 - 33026042
Alignment:
| Q |
10 |
cacataaaggaaagagaacataaaaaacatgaccgaaaagaataatttggattagaccagaaagtgggtgaaa---taattgattacctgcttcactgaa |
106 |
Q |
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| T |
33025822 |
cacataaaggaaagagaacataaaaaactcgagggataagaatcatttgaattagaccagaaagtgggtgaagaattaatgtattgcctgcatcaatgaa |
33025921 |
T |
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| Q |
107 |
ataggaaatgtgatccttccacattgttgaggagtcttgatgatctctaacatggcggacctccatgatttacatactgaagcacaaaagataacaacag |
206 |
Q |
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| T |
33025922 |
ataggaaatgtgatccttccacattgctgaagagttttgacgatctcttttgtgacggacctccatgatttacatactgaagcacagacgacaacaacag |
33026021 |
T |
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| Q |
207 |
cacgtgcaggccaagatgtct |
227 |
Q |
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| T |
33026022 |
cacgtgcaggccaagatgtct |
33026042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 6 - 226
Target Start/End: Original strand, 33019775 - 33019993
Alignment:
| Q |
6 |
catacacataaaggaaagagaacataaaaaacatgaccgaaaagaataatttggattagaccagaaagtgggtgaaataattgattacctgcttcactga |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||| | | | |||||||||| || ||||||||||||||| ||| |||| ||||||||||||| ||| |
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| T |
33019775 |
catacacataaaggaaagagaacataaaaaac-tgagcaatacgaataatttgtatcagaccagaaagtgggagaag-aattcattacctgcttcaatga |
33019872 |
T |
|
| Q |
106 |
aataggaaatgtgatccttccacattgttgaggagtcttgatgatctctaacatggcggacctccatgatttacatactgaagcacaaaagataacaaca |
205 |
Q |
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|||||||||||| | | |||||||||| ||||||||||||| ||||||||| || ||||||||| ||||||||||| ||||||||| ||| ||||| |
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| T |
33019873 |
aataggaaatgtaagcattccacattgctgaggagtcttgacaatctctaacgtgatggacctccacgatttacataccgaagcacaacagacaacaatg |
33019972 |
T |
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| Q |
206 |
gcacgtgcaggccaagatgtc |
226 |
Q |
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||||| ||||||||||||||| |
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| T |
33019973 |
gcacgggcaggccaagatgtc |
33019993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 33030316 - 33030452
Alignment:
| Q |
1 |
ctatccatacacataaaggaaagagaacataaaaaacatgaccgaaaagaataatttggattagaccagaaagtgggtgaaataattgattacctgcttc |
100 |
Q |
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|||| ||||||||| ||||||| ||||||||||||| |||| ||||| |||| |||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
33030316 |
ctatgcatacacatgaaggaaatagaacataaaaaatatgagggaaaatgataaattggattagaccagaaagtgggtgaa-taatttattacctgcttc |
33030414 |
T |
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| Q |
101 |
actgaaataggaaatgtgatccttccacattgttgagg |
138 |
Q |
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|||||||||||||||||||||||| ||||||| ||||| |
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| T |
33030415 |
actgaaataggaaatgtgatcctttcacattgctgagg |
33030452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 227
Target Start/End: Complemental strand, 32828948 - 32828805
Alignment:
| Q |
84 |
aattgattacctgcttcactgaaataggaaatgtgatccttccacattgttgaggagtcttgatgatctctaacatggcggacctccatgatttacatac |
183 |
Q |
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|||| ||||| || |||| |||||||||||||||||||||||| ||||| || ||||||||||| ||||| | |||||||||||||||||||||| |
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| T |
32828948 |
aatttattacttgtttcaatgaaataggaaatgtgatccttccgcattgctggggagtcttgataatctccttagtaacggacctccatgatttacatac |
32828849 |
T |
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| Q |
184 |
tgaagcacaaaagataacaacagcacgtgcaggccaagatgtct |
227 |
Q |
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||||||||||| | |||||||||||| |||||||||||||||| |
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| T |
32828848 |
cgaagcacaaaaaacaacaacagcacgagcaggccaagatgtct |
32828805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 7880175 - 7880236
Alignment:
| Q |
166 |
cctccatgatttacatactgaagcacaaaagataacaacagcacgtgcaggccaagatgtct |
227 |
Q |
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||||||||||||||| || ||||||||| | | ||||||||||||||||||||||| |||| |
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| T |
7880175 |
cctccatgatttacacacagaagcacaagaaacgacaacagcacgtgcaggccaagaagtct |
7880236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0479 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0479
Description:
Target: scaffold0479; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 12550 - 12494
Alignment:
| Q |
166 |
cctccatgatttacatactgaagcacaaaagataacaacagcacgtgcaggccaaga |
222 |
Q |
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||||||||||||||| || ||||||||| | || ||||||| ||||||||||||||| |
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| T |
12550 |
cctccatgatttacacacagaagcacaagaaatgacaacagtacgtgcaggccaaga |
12494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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