View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10351_low_3 (Length: 446)
Name: NF10351_low_3
Description: NF10351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10351_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 39797071 - 39796640
Alignment:
| Q |
1 |
tatatcaagaaaaagaaaagtagtgacgactcgagctttgaaatgagaagaaagtcgtgaaaatggtatttataaaatatatatttgctaagcatgattt |
100 |
Q |
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| T |
39797071 |
tatatcaagaaaaagaaaagtagcgacgactcaagttttgaaatgagaagagagtcgtgaaaatggtatttataaaatatatatttgcggagcatgattt |
39796972 |
T |
|
| Q |
101 |
atttattttgcttatagaaaatatctactttttaccaacaaaaaagttacttaaatgaattgtttatagaaaagttattgatcataaactgtcggtgatt |
200 |
Q |
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| T |
39796971 |
atttattttgcttatagaaaatatctactttttaccaacaaaaaagttacttaaatgaattgtttatagaaaagttattgatcataaactgtcggtgatt |
39796872 |
T |
|
| Q |
201 |
tcaaatcactattaaaaacttaaaataacaactcgtacatgattttattaagttgttttgacagagattattaagcttttgactcatgtaagataca-tg |
299 |
Q |
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| T |
39796871 |
tcaaatcattattaaaaacttaaaataacaactcgtacatgattttattaagttgttttgacagagattattaagcttttgactcatgtaagagacactg |
39796772 |
T |
|
| Q |
300 |
ttagtagcaatggtgctctcagttgcacatggtgatgacgctaccaactgagaataaaatctacactctgatcaacagtatcaataagaaattattaagt |
399 |
Q |
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| T |
39796771 |
ttagtagcaatggtgctctcagttgcacatggtgatgacgctaccaactgagaataaaatctacactctgatcaacagtatcaataagaaattattaagt |
39796672 |
T |
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| Q |
400 |
agtaaaaataaatgattatgtgaggaattaag |
431 |
Q |
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| T |
39796671 |
agtaaaaataaatgattatgtgaggaattaag |
39796640 |
T |
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